Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00017528 |
| length | 735 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 1 |
| gene id | XLOC_008865 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 102925 ~ 108414 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0010873 | positive regulation of cholesterol esterification | biological_process |
| GO:0033700 | phospholipid efflux | biological_process |
| GO:0042157 | lipoprotein metabolic process | biological_process |
| GO:0046889 | positive regulation of lipid biosynthetic process | biological_process |
| GO:0006695 | cholesterol biosynthetic process | biological_process |
| GO:0070328 | triglyceride homeostasis | biological_process |
| GO:0043691 | reverse cholesterol transport | biological_process |
| GO:0042632 | cholesterol homeostasis | biological_process |
| GO:0034372 | very-low-density lipoprotein particle remodeling | biological_process |
| GO:0034380 | high-density lipoprotein particle assembly | biological_process |
| GO:0033344 | cholesterol efflux | biological_process |
| GO:0006869 | lipid transport | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0042627 | chylomicron | cellular_component |
| GO:0034364 | high-density lipoprotein particle | cellular_component |
| GO:0015485 | cholesterol binding | molecular_function |
| GO:0005543 | phospholipid binding | molecular_function |
| GO:0060228 | phosphatidylcholine-sterol O-acyltransferase activator activity | molecular_function |
| GO:0008289 | lipid binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050302-172 | Predicted to enable cholesterol binding activity; phosphatidylcholine-sterol O-acyltransferase activator activity; and phospholipid binding activity. Predicted to be involved in several processes, including lipid homeostasis; lipid transport; and plasma lipoprotein particle organization. Predicted to act upstream of or within lipid transport. Predicted to be located in extracellular region. Predicted to be part of chylomicron and high-density lipoprotein particle. Is expressed in blood; liver; otolith; and yolk syncytial layer. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); familial visceral amyloidosis; hypolipoproteinemia (multiple); non-alcoholic steatohepatitis; and systemic lupus erythematosus. Orthologous to human APOA1 (apolipoprotein A1). |
| ensembl_id | ENSDART00000185007 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00019093 | lncRNA | downstream | 16716 | 84837 ~ 89239 (-) | True | XLOC_008863 |
| TCONS_00019092 | lncRNA | downstream | 21740 | 81571 ~ 84215 (-) | True | XLOC_008862 |
| TCONS_00018806 | lncRNA | upstream | 148596 | 255285 ~ 260813 (-) | True | XLOC_008868 |
| TCONS_00017533 | lncRNA | upstream | 176042 | 282731 ~ 289577 (-) | False | XLOC_008869 |
| TCONS_00017532 | lncRNA | upstream | 176042 | 282731 ~ 289577 (-) | False | XLOC_008869 |
| TCONS_00017534 | lncRNA | upstream | 176042 | 282731 ~ 290507 (-) | True | XLOC_008869 |
| TCONS_00018807 | lncRNA | upstream | 267691 | 374380 ~ 377966 (-) | False | XLOC_008871 |
| TCONS_00017526 | mRNA | downstream | 8750 | 93131 ~ 97205 (-) | True | XLOC_008864 |
| TCONS_00017525 | mRNA | downstream | 73804 | 26042 ~ 32151 (-) | True | XLOC_008860 |
| TCONS_00017523 | mRNA | downstream | 73824 | 16175 ~ 32131 (-) | False | XLOC_008860 |
| TCONS_00017530 | mRNA | upstream | 12368 | 119057 ~ 163586 (-) | True | XLOC_008866 |
| TCONS_00017531 | mRNA | upstream | 61313 | 168002 ~ 252813 (-) | True | XLOC_008867 |
| TCONS_00017536 | mRNA | upstream | 306854 | 413543 ~ 419597 (-) | True | XLOC_008872 |
| TCONS_00017538 | mRNA | upstream | 326346 | 433035 ~ 434503 (-) | False | XLOC_008875 |
| TCONS_00017539 | mRNA | upstream | 342408 | 449097 ~ 452347 (-) | True | XLOC_008876 |
| TCONS_00017535 | other | upstream | 242762 | 349451 ~ 349567 (-) | True | XLOC_008870 |
| TCONS_00017537 | other | upstream | 319006 | 425695 ~ 425756 (-) | True | XLOC_008873 |
| TCONS_00017597 | other | upstream | 1215101 | 1321790 ~ 1321906 (-) | True | XLOC_008910 |
| TCONS_00017627 | other | upstream | 1728282 | 1834971 ~ 1837883 (-) | True | XLOC_008922 |
| TCONS_00017639 | other | upstream | 2159280 | 2265969 ~ 2266083 (-) | True | XLOC_008927 |
