AMCG00005804 (LOC106613805,LOC101170792,LOC103364385)


Basic Information

Item Value
gene id AMCG00005804
gene name LOC106613805,LOC101170792,LOC103364385
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10615882 ~ 10623009 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005804
ATGGAGAGACCCCGTCCACGCACCCGCGCCCTCGCTGCTCGCttatatacGTTTTGCTCTCTGGTTCCTCCGGTCCGTCCCCTCACCACCACCGccgaaaaacaaaatacacgaCAGAAATCAACCACCAACTCCAAAGGACGGCGAGAGTTTCTGGCTCACCGTCTCCCGTTTCCTGGTGGGGCTGCGGCTGTAGTTTTGAGGAAGAAGGGCGACGACGACACGACACGACCCGGGCCCGACCGCACGACAGCAGCCGCGCAGAAACCCCGAGCCCCGGAGCCAATCCGAGCTGGTTTGGCGGAGCGTTGGCAGATCGACGCCTTGGTGCCGGGTCACCAGCAGCGCAACAGCCGCCGGCGGAGGGACGGAGACGGGAGTCCGGAGACGGACGTTACGACCCACAGAGCCAGATCTCTATCGCCGCGATCAGCACCCAGAGCCCCGGATCCATTGTCGCTCAGCCCCGCACGGCAGAAGATGGCCCAGCATGGGAGCCACCACGTCGCCAGCTCCCAGAAGGCGCTCATGCTGGAGATGAAGTCCCTGCAGGAGGAGCCGGTGGAGGGCTTCAGGATCACGCTGGTGGACGAGGCCGACCTGTACAACTGGGAGGTGGCGATCTTCGGGCCCCCCAACACGCACTACGAGGGGGGCTACTTCAAGGCTCGCATCAAGTTCCCAGTTGACTACCCATACTCCCCACCAGCCTTCCGCTTTCTCACCAAAATGTGGCACCCCAACATCTACGAGAACGGTGACGTGTGCATCTCCATCCTGCACCCCCCCGTGGACGACCCCCAGAGTGGAGAGCTGCCCTCAGAGAGGTGGAACCCCACGCAGAACGTCAGGACGATCCTCCTCAGCGTGATCTCGCTGCTGAACGAACCCAACACCTTCTCCCCAGCCAACGTGGACGCCTCGGTCATGTACAGGAAGTGGAGAGACAGCAAGGGCAAGGACCGCGAGTACGCAGAGATCATCAGGAAGCAGGTGCTGTCGACGCAGGCGGACGCGGAGCGGGACGGGGTGCGGGTGCCCACCACGCTGGCGGAGTACTGTGTGCAAACCCGCGCACCCGCGCCTGACGAGGGCTCCGACCTCTTCTACGACGACTACTACGATGAGGAcatggaagaggaggaggacgatGACGACTGCTGCTACGATGAGGACGACTCGGGCACCGAGGAGTCCTGACTGAGCCCTGTGCCCCCATGACCACCGACCCTCCTACTCACACATGCTCTCCCTCCCCCCTGAActtagagacacacacacacacacacacacacacacatgtcctGCACAATCCTCTGCTTTTTTAGAAAATtgattataaaaagaaaaaagacctACAAATAGAGCGGTTGGATTtctccttttgtcttttttttttcccttccccagtttggttattttttaaatgttttttatacttGAGAATCTGCCGCTGTcgttttttctccttttcttcctcCCCTTCTCTTTTTGTCTCTGGCTGGCTGTGGTTCAACCTCACGGCGTGGCACAGAGCTGCGTGGCACCAACATCGTGCCCCGTTCAGAGCAGAGGAGCAGGTTCCTCGGGggagttctctctctctctctctctctctctttctctctctgtcggCTGGTAATTCCAGTTTGTATTTCATCAAGACTGATGAACCCAACCTGAAATTCTCGTTTGTGCTCTcgcttcctcttcctcctccggCTGGCCCAGGCGTGCAGTGGTCAGACTTGTCGCACTCTTTGAACCCTGTCCCGAGTGACTGATGGTCAGGCCAGAGAGCGGAGATCTGCGGCGGCACCTGAAGGACGAGGAATGTTAAAAAACAGGAGCCCCGCACTGCAAACTGTGCCCATCTGGCGTGTCCGGCTGGCTGGCAGGCCGGTGGGCAGCGGCCGATGCCTCTCTGCTGTGACTGCTCTTCTGCAGAGCTCCTTCATTATGGGATGTGGGATGGAGGGCTGTCGGTTTCCACTACATTGCAACGAGTCTGATTCCTGTTCTCTGTGTGGCCGGGGCGGGGGGCCTTGTCTCGGTGTGGGAGGCGGCGATGGGGGGGCTCAGCAGGCAGGCTGGGGGCTGGGGGCGGACATGGAGGGTCCTCTGTTATAAACTGATGTCATAATCGGGTGTGCAGAGCttcttatgcatttattataattactattgtTTCGCTTTTGTACGTGAACTGTTGGTGTGCGTCTCAGTGGAGGTTTGGGATTCGTGTAACTGCAGgttgtctgtgtgcgtctgtctctgTATGCGCTCTGCTCTtgccctccctgcctctcctcgCTTAATGCAAGAGCAACCGAAAGAGTTAATGAATGACACCAGACAGCCTGCCTACCTTCTCAGGAAGAACGAGATCACCGCTGCCTCCTCCCTGTCCCCTGCGGGGCCCCAGTCTGCGTTGCCTCCTCCTTGTCCCCTGTGGGGCCCCCGTCTGTGCTACCACCTTCCTGTCCCCCGTGGGGCCCCTGTCTGGACTCAGGAGCACACTATCCTGGCCCCCCCCACAGTCCAGCACGGCCCCAGAACTGCCAGCTCTGAGactttctcctttctctctctctctctctctctccattttaaAGACTGTTTACAGTTGCGTGTTGATGCACATGTTGCTATTTTTGACGATCACttgttgatgtgttttattttatattttgtttttgggtttgtttgtttttcttatggtttgtaaatctatttaaaacaaaaaaataataaagatcttTATTAGAATA

Function

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 R2-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K02207 UBE2R, UBC3, CDC34; ubiquitin-conjugating enzyme E2 R

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005804 True 2771 mRNA 0.56 7 10615882 10623009

Neighbor

gene id symbol gene type direction distance location
AMCG00005857 NA coding upstream 92051 10520856 ~ 10523831 (+)
AMCG00005856 NA coding upstream 108590 10503578 ~ 10507292 (+)
AMCG00005858 NA coding upstream 113060 10502507 ~ 10502822 (+)
AMCG00005818 mpnd,LOC106591182,LOC107717566 coding upstream 129133 10480210 ~ 10486749 (+)
AMCG00005817 cactin,LOC106600017 coding upstream 179380 10431563 ~ 10436502 (+)
AMCG00005803 NA coding downstream 3440 10626449 ~ 10633432 (+)
AMCG00005837 NA coding downstream 73768 10696777 ~ 10697001 (+)
AMCG00005836 aes,chico,LOC103379965,LOC106574496,LOC107558286 coding downstream 78001 10701010 ~ 10712559 (+)
AMCG00005833 NA coding downstream 222527 10845536 ~ 10846858 (+)
AMCG00005826 sirt6,LOC107667852 coding downstream 259610 10882619 ~ 10886247 (+)
G154574 NA non-coding upstream 39445 10575979 ~ 10576437 (+)
G154505 NA non-coding upstream 89830 10523967 ~ 10526052 (+)
G154473 NA non-coding upstream 126028 10419906 ~ 10489854 (+)
G154447 NA non-coding upstream 283788 10285514 ~ 10332094 (+)
G154451 NA non-coding upstream 312385 10302957 ~ 10303497 (+)
G154583 NA non-coding downstream 44989 10667998 ~ 10668261 (+)
G154722 NA non-coding downstream 374640 10997649 ~ 10999389 (+)
G154775 NA non-coding downstream 551386 11174395 ~ 11180237 (+)
G154815 dot1l non-coding downstream 738996 11362005 ~ 11362233 (+)
G154816 NA non-coding downstream 747415 11370424 ~ 11370912 (+)
G154499 NA other upstream 99492 10512504 ~ 10516390 (+)
G154486 NA other upstream 144251 10470543 ~ 10471631 (+)
AMCG00005821 NA other upstream 146476 10462537 ~ 10469406 (+)
AMCG00005929 NA other upstream 259638 10267273 ~ 10356244 (+)
AMCG00005835 LOC107586405 other downstream 56928 10679937 ~ 10714707 (+)
AMCG00005834 LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414 other downstream 98743 10721752 ~ 10736626 (+)
G154636 LOC108435919,LOC108271001 other downstream 290388 10913397 ~ 10915729 (+)
AMCG00005840 LOC100304646,LOC107384145 other downstream 383789 11006798 ~ 11010354 (+)
G154756 NA other downstream 460152 11083161 ~ 11086011 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G302991 ub2r1,LOC108280790,LOC108433104,LOC105020474 non-coding NW_019172835.1 APWO02000053.1 380947 ~ 400259 (-)