AMCG00005812


Basic Information

Item Value
gene id AMCG00005812
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11098409 ~ 11103223 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005812
ATGGGGGACCTGGTGGGCCGGGCCCTGCGGCTGGTCCAGACCGAGTGCAGCCCAGAGCTTCTGAAGAACATCCGTCAGCTGTACGAGTCTCGGCTGGTCGACCTGCCCTTCTACCACACCCTGGAAACACTGCTGCCCCCCACTGAATTGATCCCCCAGAACAGTGAGAAGCTGCAGGACAGCCCGTGCACCTTCGAGCTGACGCACAGCCAGGTGGACCAGATCAGGAACTCCCGGGAGCTGCGTCCCGGGATGAAGTCTGTGCAGGTGGCGCTCCGAATCTGCTACACGGACTCCAGCAGCCCTCAGGAGGACCAGTACCCCCCCAACATTGCTGTCAAAGTGAACCAGGCCTACTGCCACGTACCGGGTTACTATCCCTCCAACAAGCCCGGCGTGGAGCCCCGGCGCCCCTGCCGACCCATCAACGTCACCCCCTGGCTTCACCTGTCCACTGCTACCAACCGCATCACAGTCACCTGGGGCAACTTCGGCAAGcGCTACTGCGTGGCTCTGTACCTGGTCCAGGTGTTCACGTCGGCGGACCTGTTCAGCAAGCTGAAGCGTTTCTCCGTGGAGAGCTCAGAGCGCTGCAGGGAGCTCATCCAGGACAAGTTGCGGTTCGACCCCGACAGTGAGATCGCCACCACAGGGCTCAGGGTGTCGCTGATCTGCCCGcTGGTGAAGATGCGTCTGGGCGTGCCGTGCCGGGTGCTCACCTGTGCTCACCTGCAGTGCTTCGACGCCGTGTTCTTCCTGCAGATGAACGAGAAGAAGCCGACCTGGACCTGCCCTGTGTGTGACAAGCCGGCGCCCTTCGCCCTGCTGATCATCGACGGGCTGCTGTCGGACATCCTGACCGAGACGGATGAGGAAGTGGAGGAGATCGAGTACCTGGCTGATGGGTCCTGGCGCCCCATCCGAgcggagaaggagaaggagagggagcgGGAGCGCAGCAACACGCCCGAGTTCCCCACGGTGGACATATCCCACAGCAGCACCAGCCTGAGTGGCAAGTCGGGGGTGACGGGGGGCGCGGTCGTGGACCTGACCCAGGACTCTTcctcggaggaggaggagggcggaGGGGCAGGGGACAGCGAGGACACCGACGACAGTCAGGACAGCCCCCAGCCCAAGAGGGGGCGCTACGGCTACGACAAGGACCTGGTCACTGCGTACTGA

Function

GO:

id name namespace
GO:0060339 negative regulation of type I interferon-mediated signaling pathway biological_process
GO:0032480 negative regulation of type I interferon production biological_process
GO:0005634 nucleus cellular_component
GO:0005488 binding molecular_function

KEGG:

id description
K16065 PIAS4; E3 SUMO-protein ligase PIAS4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005812 True 1188 mRNA 0.64 12 11098409 11103223

Neighbor

gene id symbol gene type direction distance location
AMCG00005813 NA coding upstream 1041 11092831 ~ 11097368 (+)
AMCG00005869 unc13a coding upstream 135722 10929794 ~ 10962687 (+)
AMCG00005868 NA coding upstream 174862 10919948 ~ 10923547 (+)
AMCG00005867 eef2b,ef2,LOC106613766,LOC107552698 coding upstream 185737 10906357 ~ 10912672 (+)
AMCG00005826 sirt6,LOC107667852 coding upstream 212162 10882619 ~ 10886247 (+)
AMCG00005815 LOC105011560,LOC106515027,LOC106613776,LOC103149819,LOC103463645 coding downstream 36575 11139798 ~ 11140832 (+)
AMCG00005816 LOC106613776,LOC100708007,LOC103354199,LOC102796955 coding downstream 67791 11171014 ~ 11172074 (+)
AMCG00005854 LOC108270825,LOC105011562,LOC103046807,LOC108438768,LOC102210929,LOC108247476,LOC101470054,LOC105929969 coding downstream 102164 11205387 ~ 11206589 (+)
AMCG00005853 LOC104941186,LOC107581323,LOC107678192 coding downstream 139616 11242839 ~ 11243798 (+)
AMCG00005873 NA coding downstream 221608 11324831 ~ 11331121 (+)
G154722 NA non-coding upstream 99020 10997649 ~ 10999389 (+)
G154583 NA non-coding upstream 430148 10667998 ~ 10668261 (+)
G154574 NA non-coding upstream 521972 10575979 ~ 10576437 (+)
G154505 NA non-coding upstream 572357 10523967 ~ 10526052 (+)
G154473 NA non-coding upstream 608555 10419906 ~ 10489854 (+)
G154775 NA non-coding downstream 71172 11174395 ~ 11180237 (+)
G154815 dot1l non-coding downstream 258782 11362005 ~ 11362233 (+)
G154816 NA non-coding downstream 267201 11370424 ~ 11370912 (+)
G154831 NA non-coding downstream 275557 11378780 ~ 11379289 (+)
G154847 NA non-coding downstream 312842 11416065 ~ 11416329 (+)
G154756 NA other upstream 12398 11083161 ~ 11086011 (+)
AMCG00005840 LOC100304646,LOC107384145 other upstream 88055 11006798 ~ 11010354 (+)
G154636 LOC108435919,LOC108271001 other upstream 182680 10913397 ~ 10915729 (+)
AMCG00005834 LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414 other upstream 361783 10721752 ~ 10736626 (+)
AMCG00005835 LOC107586405 other upstream 383702 10679937 ~ 10714707 (+)
G154798 NA other downstream 216741 11319964 ~ 11361770 (+)
AMCG00005907 LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791 other downstream 303083 11406306 ~ 11409672 (+)
AMCG00005886 ssbp4,LOC107588873,LOC107690032,LOC107721784,LOC107676978,LOC107729707 other downstream 498679 11601902 ~ 11610151 (+)
AMCG00005895 NA other downstream 800129 11903352 ~ 11906087 (+)
AMCG00005987 NA other downstream 1588593 12691816 ~ 12709543 (+)

Expression


Co-expression Network