AMCG00005816 (LOC106613776,LOC100708007,LOC103354199,LOC102796955)


Basic Information

Item Value
gene id AMCG00005816
gene name LOC106613776,LOC100708007,LOC103354199,LOC102796955
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11171014 ~ 11172074 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005816
atgaaggaaacaaaacaggagaaagagagacaaacagaAGTAAAGGGAAAGCAGCGGCTGGTGTTCACAGACCTGCAGCGCCGCACCCTCATCGCCATCTTCAAGGAGAACAAGCGGCCGTCCAAGGAGATGCAGATCACCATCTCGCAGCAGCTGGGCCTGGAGCTCAACACCGTCAGCAACTTCTTCATGAATGCGCGGCGCCGCTGTGTGGACCGCTGGCACGATGAGCATGGCACCAGCCCCGGCCAGCCCGGCACCTCCGCCACCACCTTCTCCAAGGCCTGA

Function

NR:

description
PREDICTED: hepatocyte nuclear factor 6-like isoform X3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001889 liver development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005816 True 288 mRNA 0.59 2 11171014 11172074

Neighbor

gene id symbol gene type direction distance location
AMCG00005815 LOC105011560,LOC106515027,LOC106613776,LOC103149819,LOC103463645 coding upstream 30182 11139798 ~ 11140832 (+)
AMCG00005812 NA coding upstream 67791 11098409 ~ 11103223 (+)
AMCG00005813 NA coding upstream 73646 11092831 ~ 11097368 (+)
AMCG00005869 unc13a coding upstream 208327 10929794 ~ 10962687 (+)
AMCG00005868 NA coding upstream 247467 10919948 ~ 10923547 (+)
AMCG00005854 LOC108270825,LOC105011562,LOC103046807,LOC108438768,LOC102210929,LOC108247476,LOC101470054,LOC105929969 coding downstream 33313 11205387 ~ 11206589 (+)
AMCG00005853 LOC104941186,LOC107581323,LOC107678192 coding downstream 70765 11242839 ~ 11243798 (+)
AMCG00005873 NA coding downstream 152757 11324831 ~ 11331121 (+)
AMCG00005874 plekhj1 coding downstream 167530 11339604 ~ 11343604 (+)
AMCG00005906 clg08h19orf60,cssa23h19orf60,LOC108439285,LOC107729673,LOC107676986,LOC103025814,LOC107593355 coding downstream 285424 11457498 ~ 11460743 (+)
G154722 NA non-coding upstream 171625 10997649 ~ 10999389 (+)
G154583 NA non-coding upstream 502753 10667998 ~ 10668261 (+)
G154574 NA non-coding upstream 594577 10575979 ~ 10576437 (+)
G154505 NA non-coding upstream 644962 10523967 ~ 10526052 (+)
G154473 NA non-coding upstream 681160 10419906 ~ 10489854 (+)
G154775 NA non-coding downstream 2321 11174395 ~ 11180237 (+)
G154815 dot1l non-coding downstream 189931 11362005 ~ 11362233 (+)
G154816 NA non-coding downstream 198350 11370424 ~ 11370912 (+)
G154831 NA non-coding downstream 206706 11378780 ~ 11379289 (+)
G154847 NA non-coding downstream 243991 11416065 ~ 11416329 (+)
G154756 NA other upstream 85003 11083161 ~ 11086011 (+)
AMCG00005840 LOC100304646,LOC107384145 other upstream 160660 11006798 ~ 11010354 (+)
G154636 LOC108435919,LOC108271001 other upstream 255285 10913397 ~ 10915729 (+)
AMCG00005834 LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414 other upstream 434388 10721752 ~ 10736626 (+)
AMCG00005835 LOC107586405 other upstream 456307 10679937 ~ 10714707 (+)
G154798 NA other downstream 147890 11319964 ~ 11361770 (+)
AMCG00005907 LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791 other downstream 234232 11406306 ~ 11409672 (+)
AMCG00005886 ssbp4,LOC107588873,LOC107690032,LOC107721784,LOC107676978,LOC107729707 other downstream 429828 11601902 ~ 11610151 (+)
AMCG00005895 NA other downstream 731278 11903352 ~ 11906087 (+)
AMCG00005987 NA other downstream 1519742 12691816 ~ 12709543 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000077_00154438_00178595 ONECUT3, ONECUT3A coding CI01000077 null 154438 ~ 178595 (+)