RNA id: AMCG00005816


Basic Information

Item Value
RNA id AMCG00005816
length 288
RNA type mRNA
GC content 0.59
exon number 2
gene id AMCG00005816
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11171014 ~ 11172074 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgaaggaaacaaaacaggagaaagagagacaaacagaAGTAAAGGGAAAGCAGCGGCTGGTGTTCACAGACCTGCAGCGCCGCACCCTCATCGCCATCTTCAAGGAGAACAAGCGGCCGTCCAAGGAGATGCAGATCACCATCTCGCAGCAGCTGGGCCTGGAGCTCAACACCGTCAGCAACTTCTTCATGAATGCGCGGCGCCGCTGTGTGGACCGCTGGCACGATGAGCATGGCACCAGCCCCGGCCAGCCCGGCACCTCCGCCACCACCTTCTCCAAGGCCTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001889 liver development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194890 lncRNA upstream 171625 10997649 ~ 10999389 (+) True G154722
TU194697 lncRNA upstream 456307 10690143 ~ 10714707 (+) False AMCG00005835
TU194699 lncRNA upstream 477061 10690143 ~ 10693953 (+) True AMCG00005835
TU194696 lncRNA upstream 502753 10667998 ~ 10668261 (+) True G154583
TU194687 lncRNA upstream 594577 10575979 ~ 10576437 (+) True G154574
TU194957 lncRNA downstream 2321 11174395 ~ 11180237 (+) True G154775
TU194983 lncRNA downstream 147890 11319964 ~ 11361770 (+) False G154798
TU195006 lncRNA downstream 189931 11362005 ~ 11362233 (+) True G154815
TU195007 lncRNA downstream 198350 11370424 ~ 11370912 (+) True G154816
TU195024 lncRNA downstream 206706 11378780 ~ 11379289 (+) True G154831
AMCG00005815 mRNA upstream 30182 11139798 ~ 11140832 (+) True AMCG00005815
AMCG00005812 mRNA upstream 67791 11098409 ~ 11103223 (+) True AMCG00005812
AMCG00005813 mRNA upstream 73646 11092831 ~ 11097368 (+) True AMCG00005813
AMCG00005840 mRNA upstream 161153 11006798 ~ 11009861 (+) False AMCG00005840
AMCG00005869 mRNA upstream 208327 10929794 ~ 10962687 (+) True AMCG00005869
AMCG00005854 mRNA downstream 33313 11205387 ~ 11206589 (+) True AMCG00005854
AMCG00005853 mRNA downstream 70765 11242839 ~ 11243798 (+) True AMCG00005853
AMCG00005873 mRNA downstream 152757 11324831 ~ 11331121 (+) True AMCG00005873
AMCG00005874 mRNA downstream 167530 11339604 ~ 11343604 (+) True AMCG00005874
AMCG00005907 mRNA downstream 234232 11406306 ~ 11409672 (+) True AMCG00005907
TU194931 other upstream 85003 11083161 ~ 11086011 (+) True G154756
TU194894 other upstream 160660 11007544 ~ 11010354 (+) True AMCG00005840
TU194757 other upstream 255285 10913397 ~ 10915729 (+) True G154636
TU194711 other upstream 440805 10722332 ~ 10730209 (+) False AMCG00005834
TU194591 other upstream 654624 10512504 ~ 10516390 (+) True G154499
TU194985 other downstream 147890 11319964 ~ 11325074 (+) True G154798
TU195111 other downstream 430353 11602427 ~ 11605275 (+) False AMCG00005886
TU195202 other downstream 731312 11903386 ~ 11905844 (+) False AMCG00005895
TU195527 other downstream 1519742 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other downstream 1520686 12692760 ~ 12696319 (+) False AMCG00005987

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000077_00154438_00178595.mRNA True 1323 mRNA 0.63 2 CI01000077 154438 ~ 178595 (+)