RNA id: TU194983



Basic Information


Item Value
RNA id TU194983
length 1202
lncRNA type read_through
GC content 0.40
exon number 2
gene id G154798
representative False

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11319964 ~ 11361770 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCCCGTTAAGATAGATCTATTAATAACGCTGGCATTATTATAGCcagaaacattgtttttgcattacGGCAAACTAGAGACTTGGGGCTTCCAAATGATACCAGGATGTGTGGAGATACTGACTTTCAAATCAGAGGAAACATTTTCTTGGGTGCtagttttaatacatacaaaaataaatgagcatAACTCCAGTTTTcaccatttgttttaaaatatggattttgAAAAGGGCAAATggtaagaaaaataagtttacattgATATTGTCATGAAATCCTTGTGGCCCTTATAATGCAGAAATGGCCACTTGTTAGTATTCTGTGGTACAAATTCCCTGAACGTTTACACCTAGGctagttttttttcaaatgcacattattccttcattccTTATGGGATTTTCATCCAACAACTTTTCCAAATTTCAATAGGAGTGGCATTTTTTCCAAAAAAAGATTTCATATATGGAGAATGGAGAACaaaagtcaacatttcaaaaaaagcaatttgtttttgtgtaaaaaaacaatatagttgTCTAATCATGACCAACCattgataggtgtcacatacctgtactccttaGAACGTCCATATTACACACTTGCATGTCTAAGTACAACCAGGCCCAAATAGGTCCAAGTGCAAAGTTAAATTGGATTGTTAAAGGCCAATATATGCAGGTATGAGTGTCTATATAGGAGGTAATTTCACATTGAACTAAGGTCATGGAAGAGGTACAGATAAGATGGTGCAGCTCAGACTGCAGTTGCACAGCAATGCACACAAAACATCTCAGCAGCCGGGGCACAGTAGGGTGAGCAGTTTATTGTTGCACACTGTTACAACATGCAGATTgtaatcagaaaaataaatgggacCAGATCAACaagaaatcaatgtaaaaaGTGTTTTCAGTATTCATATTTCAACCACCAGAGAGCAGGCATGCACCCATTCACAGGActgggaacaaaataaaacaatctaaacAGATGcatgtgagggagagagagaagatgcaCGAGGGTCTGGAACAGAAGGAAACTAGAACATTTCTGCATGGGGATTTCAACCATAAATTTTACATCTTCAGAGATGAACAGGTGGCGGGCAGATGGGTGAGGGACAGGGAAGCGGAAACCAAGACGGGTCCCACAGAGGGTGCGAgtgtgaaggggggggggGGTGGGGGGGCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU194957 lncRNA upstream 139727 11174395 ~ 11180237 (+) True G154775
TU194890 lncRNA upstream 320575 10997649 ~ 10999389 (+) True G154722
TU194697 lncRNA upstream 605257 10690143 ~ 10714707 (+) False AMCG00005835
TU194699 lncRNA upstream 626011 10690143 ~ 10693953 (+) True AMCG00005835
TU194696 lncRNA upstream 651703 10667998 ~ 10668261 (+) True G154583
TU195006 lncRNA downstream 235 11362005 ~ 11362233 (+) True G154815
TU195007 lncRNA downstream 8654 11370424 ~ 11370912 (+) True G154816
TU195024 lncRNA downstream 17010 11378780 ~ 11379289 (+) True G154831
TU195034 lncRNA downstream 44590 11406360 ~ 11409432 (+) False AMCG00005907
TU195045 lncRNA downstream 54295 11416065 ~ 11416329 (+) True G154847
AMCG00005853 mRNA upstream 76166 11242839 ~ 11243798 (+) True AMCG00005853
AMCG00005854 mRNA upstream 113375 11205387 ~ 11206589 (+) True AMCG00005854
AMCG00005816 mRNA upstream 147890 11171014 ~ 11172074 (+) True AMCG00005816
AMCG00005815 mRNA upstream 179132 11139798 ~ 11140832 (+) True AMCG00005815
AMCG00005812 mRNA upstream 216741 11098409 ~ 11103223 (+) True AMCG00005812
AMCG00005907 mRNA downstream 44536 11406306 ~ 11409672 (+) True AMCG00005907
AMCG00005906 mRNA downstream 95728 11457498 ~ 11460743 (+) True AMCG00005906
AMCG00005908 mRNA downstream 115925 11477695 ~ 11486383 (+) True AMCG00005908
AMCG00005865 mRNA downstream 133371 11495141 ~ 11507437 (+) True AMCG00005865
AMCG00005866 mRNA downstream 196679 11558449 ~ 11562627 (+) True AMCG00005866
TU194931 other upstream 233953 11083161 ~ 11086011 (+) True G154756
TU194894 other upstream 309610 11007544 ~ 11010354 (+) True AMCG00005840
TU194757 other upstream 404235 10913397 ~ 10915729 (+) True G154636
TU194711 other upstream 589755 10722332 ~ 10730209 (+) False AMCG00005834
TU194591 other upstream 803574 10512504 ~ 10516390 (+) True G154499
TU195111 other downstream 240657 11602427 ~ 11605275 (+) False AMCG00005886
TU195202 other downstream 541616 11903386 ~ 11905844 (+) False AMCG00005895
TU195527 other downstream 1330046 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other downstream 1330990 12692760 ~ 12696319 (+) False AMCG00005987
TU195530 other downstream 1335578 12697348 ~ 12698530 (+) False AMCG00005987

Expression Profile