AMCG00005836 (aes,chico,LOC103379965,LOC106574496,LOC107558286)


Basic Information

Item Value
gene id AMCG00005836
gene name aes,chico,LOC103379965,LOC106574496,LOC107558286
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10701010 ~ 10712559 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005836
ATGGTGGCGCACGCTTTGCCCCGGTGTTCCTGTACTTGTGTGACCATGGCCAAGCCAGCAAGGAAGGCTTCATCCCAGTCATCGCAGCAGCTGAAGTTCACCACCTCAGACTCCTGCGACAGGATCAAAGATGAGTTCCAGTTTCTCCAAGCACAGTATCACAGTCTGAAACTGGAGTGTGACAAGCTGGCCAGCGAGAAGTCGGAAATGCAGCGCCATTACATCATGTACTACGAAATGTCATACGGGCTGAACATCGAAATGCACAAACAGGCGGAAATTGTGAAGAGATTAAATGGAATCTGCGCCCAGGTGCTCCCCTACCTGTCACAAGAGcaccagcagcaggtCCTGGGAGCGATCGAGAGGGCCAAGCAAGTCACCCCTCCGGAGATGAACTCCATTATTCGGcagcagctccaggctCACCAGCTCTCCCAGTTGCAGGGTCTCGCCCTCCCCATGACCCCGCTGCCCCTGGGCCTGACCCCGCCCACCCTGCCGGCCTGTCGATGGAAAGACCGCAACGCAGCGCCCCCTGGGGTGGCGGACGAGTCAGACGTGCAGCGGGCGGACCACACCCTCGGCCCCTCGGCCTCTGCTCCGCTGCCgtggttttga

Function

symbol description
chico Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of canonical Wnt signaling pathway. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human TLE5 (TLE family member 5, transcriptional modulator).
aes acetyl esterase; TLE family member 5 (amino-terminal enhancer of split)

NR:

description
PREDICTED: amino-terminal enhancer of split-like isoform X1

GO: NA

KEGG:

id description
K24724 AES, TLE5; TLE family member 5 (amino-terminal enhancer of split)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005836 True 621 mRNA 0.59 8 10701010 10712559

Neighbor

gene id symbol gene type direction distance location
AMCG00005837 NA coding upstream 4009 10696777 ~ 10697001 (+)
AMCG00005803 NA coding upstream 67578 10626449 ~ 10633432 (+)
AMCG00005804 LOC106613805,LOC101170792,LOC103364385 coding upstream 78001 10615882 ~ 10623009 (+)
AMCG00005857 NA coding upstream 177179 10520856 ~ 10523831 (+)
AMCG00005856 NA coding upstream 193718 10503578 ~ 10507292 (+)
AMCG00005833 NA coding downstream 132977 10845536 ~ 10846858 (+)
AMCG00005826 sirt6,LOC107667852 coding downstream 170060 10882619 ~ 10886247 (+)
AMCG00005867 eef2b,ef2,LOC106613766,LOC107552698 coding downstream 193798 10906357 ~ 10912672 (+)
AMCG00005868 NA coding downstream 207389 10919948 ~ 10923547 (+)
AMCG00005869 unc13a coding downstream 217235 10929794 ~ 10962687 (+)
G154583 NA non-coding upstream 32749 10667998 ~ 10668261 (+)
G154574 NA non-coding upstream 124573 10575979 ~ 10576437 (+)
G154505 NA non-coding upstream 174958 10523967 ~ 10526052 (+)
G154473 NA non-coding upstream 211156 10419906 ~ 10489854 (+)
G154451 NA non-coding upstream 397513 10302957 ~ 10303497 (+)
G154722 NA non-coding downstream 285090 10997649 ~ 10999389 (+)
G154775 NA non-coding downstream 461836 11174395 ~ 11180237 (+)
G154815 dot1l non-coding downstream 649446 11362005 ~ 11362233 (+)
G154816 NA non-coding downstream 657865 11370424 ~ 11370912 (+)
G154831 NA non-coding downstream 666221 11378780 ~ 11379289 (+)
G154499 NA other upstream 184620 10512504 ~ 10516390 (+)
G154486 NA other upstream 229379 10470543 ~ 10471631 (+)
AMCG00005821 NA other upstream 231604 10462537 ~ 10469406 (+)
AMCG00005929 NA other upstream 344766 10267273 ~ 10356244 (+)
AMCG00005834 LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414 other downstream 9193 10721752 ~ 10736626 (+)
G154636 LOC108435919,LOC108271001 other downstream 200838 10913397 ~ 10915729 (+)
AMCG00005840 LOC100304646,LOC107384145 other downstream 294239 11006798 ~ 11010354 (+)
G154756 NA other downstream 370602 11083161 ~ 11086011 (+)
G154798 NA other downstream 607405 11319964 ~ 11361770 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021126 tle5 coding NC_007133.7 CM002906.2 21794037 ~ 21845685 (-)