AMCG00006084 (ptbp1,LOC106613576)


Basic Information

Item Value
gene id AMCG00006084
gene name ptbp1,LOC106613576
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16464012 ~ 16487227 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006084
CTCAGCTAGTCTGCCGTCCCGCTGCTCTGACctgcagttgtgtgttgtgcaaTGGACGGCAGTGTCCACGATATAACAGTTGGTACAAAGcgGGGATCTGACGAGCTTTTTTCTTGCGTATCCAACGGGCCCTATATCATGAGCAATTCGTCTGGCGCAGCTAATGGCAACGATAGTAAGAAATTCAAAGGAGACATAAGGAGCCCTGGGGTTCCTTCCCGTGTCATCCACGTGCGCAAGCTCCCCAATGACATCAATGAAGCGGAGGTCATCTCCCTGGGACTGCCCTTTGGCAAAGTCACTAACCTGCTTATGCTTAAAGGAAAGAATCAGGCCTTCCTAGAAATGAACACGGAGGAGGCTGCCCAGACCATGGTCTCCTACTATTCCTCGGTGACTCCAGTCATCAGGAACCACCCCATTTTCATGCAGTACTCCAATCACAAAGAACTCAAGACTGACAATTCACCAAATCAAGTGCGGGCACAAGCTGCTCTTCAGGCAGTGAATGCAGTCCAGACGGGCAGTATGCCAATGAGCAGTGTGGACACCTCGGGGCTGGGCACCCAGAGTCCTGTGCTGCGCATCATTGTGGAAAATCTCTTCTACCCTGTGACGCTGGACGTTCTGCACCAGATATTTTCCAAATTTGGCACTGTATTGAAGATTATCACATTTACCAAAAACAACCAGTTCCAGGCCCTCCTCCAGTACTCGGATGGCTTGACTGCACAGCATGCTAAACTGGCCCTGGATGGCCAGAACATCTACAACGCCTGCTGCACTCTGCGCATCAACTTCTCCAAACTGACCAGTCTGAATGTGAAGTACAACAACGAGAAAAGCCGTGACTACACTCGGCCAGACCTGCCCACCGGGGACAGCCAGCCTTCCATTGATCACCAGACCATGGCTGCAGCCTTTGGTGCTCCTGGTATAATCTCTGCCAACCCCTATGCAGGAGCTCCTGGGTTCCCCCCTGCCTTTGCCATTCAGCAGGCTGCAGgtcTGACCATGCCCGGAGTCCCTGGGGCACTGGCTTCTCTGGCCATGCCCAGTGCTGCCGCTGCGGCTGCGGCTGCCGGACGGCTGGGCATGCACGGGCTTGGTGGTGGCCATTCTGTCCTGCTGGTTAGCAACCTGAACTCTGAGAGAGTTACGCCCCAATGCCTCTTTATTCTTTTCGGTGTCTATGGTGATGTGATGAGAGTAAAGATCCTCtttaacaaaaaggaaaatgcgCTGGTTCAGATGGCAGATGGGACGCAGGCTCAGCTAGCAATGAGTCACCTGAATGGACAGAAGCTCCATGGGAAGGCGATCAGAGTGACCCTGTCCAAACACACAACAGTCCAGCTGCCTCGTGAGGGCCAGGAGGACCAAGGGCTCACCAAGGACTTCAGCAACTCGCCCCTGCACCGATTCAAGAAGCCTGGCTCCAAGAACTACCAGAATATCTTCCCTCCCTCCGCCACCCTCCATCTCTCAAACATCCCACCTTCGGTGGTTGAAGAGGACCTCAAGATGCTGTTTGCGAGCTCTGGTGCTTTGGTCAAGGCCTTCAAGTTCTTCCAGAAAGACCGCAAGATGGCGCTAATTCAGATGGGCTCAGTGGAGGAAGCAATCCAATGCCTGATTGAGTTCCACAATCACGACCTTGGAGAGAACCATCACCTCAGAGTGTCTTTCTCCAAGTCCACAATCTGAGGGACCAGCTGCAGGGGGTTGAGGGGATGGACTGTCACTTTAGACGACTATTACTTTGTGGGAATGTTCTTCAGCTGGAGAAATGTCCACAAGATTCACTTCCATCAttccttatatatttatatatatatatctatctataaatGCCACTTTGAACCTAGTGACCAGAGAGAAAAACCAGAGATTTTATTTGGAGTTTTTAagcttactttttttttgttttatgaactgGTATAATCATTCCCATTTGTGTGCATGTTATGTTTATCTACAGATCTTGAATATAGTTTACACTTTGTCTCTGGGAAGTCCCACAATTGAGACTATCAGGTTGCACACTTCAATCTCTCCCCCCCCCTTTGCCTTTTCCTTTATTATACTCATGATACCTTTTGGGGGCCCATACCACTAGGTTTTGAGGTGTTTGTATAGTACTTTTGTCCTTTCTGCCTTTCAAAAAAACAATCCTGTGCCTTAAGTCTTACTAGTTAAGAAATACTTGATTAAATTGAGTTTTCATGAGCATCTTGTTTTGCATAAATTTTAAATTGATGCACAAAAAGCTATTTGATCCACCACGACTCTTTGGAAGGCCGAAAACTGGGATTTTAAGCACGACTCTTGGTTGATGTACTGTTCGTGAAGCTCCTTTTCTGTGCGTGTTTTGCATGTCCAGATCATGGTGCCAGTAAATTTGCAGGTTCACTTTTAGAACGTGCACAACTTTATGCTTTGTTAATTGATCCTGCAAGTCTCTTGTAGAGGTCtgttaatgaaagaaaaagcacaaaaggGTAGATTTTAGCCACATGCAATAGCTGTAAGTGCATTTTGAATTTGGCAAGGCTAGTTTGGAtcattccccccccaccccccagtgaGTATTATTTAGCTTGCAATTGTTTCCATATTAGCCTTTTTATATAATGGGACTCCTCCATCTTATGCATATGTAAAATcctatttactgtatattactTTCTGTAGCTTTAGGAAACTTCATTCCTTTAGGaaacttcatttttattttatgcaaattttttttgtaaaatccAATATTGTGACTTAAGTATATTCACTGCATTCCtatactgtttttctttagtgGTTAGGTCCATTTGGGTCAGTGGTGTTTTAATCGGTTTTGTCACTGTGCCTTTGTTTTTCCAACTCTGAAATCCATAAGCTCCAGAGACCTGGGATGCTGgacaggcttttttttttttttttttgtgatttccttcccccccccctccatttgGTATTATTGTCAATCAACTTTTGGTCTTAACTGCCTGTCATCGTATACTCCCAGCTTTTATATCTGAAACTTCAAAGCTCAAACCAAACAAGGCCCTGTGCATATTTCTGAATTGTTATTCAGAACTATAAATTTTCTCCCTCTTGAAACCACTTTTGAATCTGACcctacaaatgttttttttttttttttttttttttcctgtatacAGATGTATGCCTTGGAGTAATTAGTCTTAATTTTGAAGGAAAGCTGCTGCAGTTTCCTGTGGAGTTCTTGAATAACTCAAACGTGCACAGGGTAATCTTTATATAATACAGTGGGAGCTAAATGGTTTGATTTTCAGTGCCTTTTGGTTCCCAACTGCTATCTGTGGTGGTCTGCTTTACATCTAGGCAGTCTGTATTTGGGATACATACATCATGCTTCACTGTCTTAATATATATAGGTCTGTCTTGCCTAACTAAAACTCTGCCTCTTTATTTGGAATTGCACACGTGTACAGACCAGAGCTGTTgtccagtttatttttcccccGGTGTTCTTAAACCAAGGCAAGACCTCAAAATGGTAAAACCGTGGACTGCTCAGGTTTGTGCTTGCCACAGTCTACAACGTTGATATACCCAACCACCCTTAAGTCTTGGCTTGTGTGTTGCCTGTTGCCTGTTAATGTGGGTAGTTCTGCAGGATTCTACCCAGTCTTAGGTTTCAGACATTCCTTTGTGCCTTTTGAATTTGACGCTTATAACTTCTTGAAATTCTTGTGTACCATTTGATTTGAATCCTCTTAAGAGTGCAAAACCCATTTTTGTACAATACATTTCAGGGTAATGAAAGCATATCTAGGAccaaagttattttttattttttaattattttatgtttcttgaCTCTCCTAGTTTTGGCTAGGCCTGGtccgtttttttcttttggtagtTATTCAGTTTGTGTAGGCAAAGACCATATAATTTGAGTTGTACATTTAATGTGATCCTACAAGCACTGCAAACGTATACTCTGCAGTAGCTTCCTAAAACATTGGGTCTTTGGTTAAATGTGCAGTTTTCTGGCACCAGATGGTGTCATTGCTGAGGAAGGCAGGATTAAATTACTAGGAAATGGGAATTGGACTCGTTGTACATGCGCCATAAGCCTTCTGAAAACTGACCTGTTAATACAGTTTCCCAAATCCTCAGCTGACATGCATTCCATAATATCAAGGTCTTTGCAAATCTGGCCTTTATCCCTCTTCAAAAAACTTTGCAGAGATTCAAAAATTTCCCCGTGCAATTAACTTTTGCATACGTTGCATGTGTGAAATGTTGAACTTGGTGGGCCTAGCTTTCAGTGGAGTATATAGTAAGCATTTAATGTGGAGGTATTAGGCTGAAAGTTTCACTTAATATATTGTGAAGAAATGGTCAATTTTTATATTGGTGACAATGGCTCCCTTAACATACAGCTGTAATTTCAACACTCTTGAAAGAAGACcagaatttgtttttccaaatgcatAGTTGCGCAGAGGTAACTTAACTGCACAATGTTTGCAGCTTCTTAATTTCTCCAAAATCCCTGTTTTGTAAAGAACgttttgaatttatattttaggGGAGGATGAGGGAGGGTGTGggagggggaagagaaaaaaaaaaaaggtgtaaatattaatgttttttttgtaccaGATAAATGGTGATTGGGAAGCAATACAGGTTTTAtatctataaaacaaatgtatattttgatagCAACTATGACCAGGGTTTTTCAGACTATTCTAGAGCTGTTTAAGGAGAgtttgtattacaaaaaaaaaaattaaaatattttctaacaATTTTGTATCTTTCTGTAATTTTGTTTGTCCCTTTTCAAACCCATTGTAGTGATTTAATGGCTCGTACCCTCTGGATCTTGTGCCTTCAATAAATCTCTCATTTATTCCTG

Function

symbol description
ptbp1 Enables pre-mRNA binding activity. Involved in several processes, including IRES-dependent viral translational initiation; positive regulation of calcineurin-NFAT signaling cascade; and regulation of mRNA splicing, via spliceosome. Located in extracellular exosome and membrane.

NR:

description
PREDICTED: polypyrimidine tract-binding protein 1 isoform X4

GO: NA

KEGG:

id description
K17844 PTBP3, ROD1; polypyrimidine tract-binding protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006084 True 4921 mRNA 0.42 16 16464012 16487227

Neighbor

gene id symbol gene type direction distance location
AMCG00006110 LOC106574064,LOC106613575,LOC105011408 coding downstream 176684 16277086 ~ 16287328 (-)
AMCG00006109 LOC104962492 coding downstream 255334 16190630 ~ 16208678 (-)
AMCG00006108 NA coding downstream 283476 16155306 ~ 16180536 (-)
AMCG00006115 NA coding downstream 388286 16073363 ~ 16075726 (-)
AMCG00006114 LOC107578059 coding downstream 432835 16024475 ~ 16031177 (-)
AMCG00006119 NA coding upstream 11425 16498652 ~ 16500578 (-)
AMCG00006120 NA coding upstream 40995 16528222 ~ 16566157 (-)
AMCG00006117 NA coding upstream 140746 16627973 ~ 16637966 (-)
AMCG00006146 NA coding upstream 160795 16648022 ~ 16660916 (-)
AMCG00006147 NA coding upstream 173725 16660952 ~ 16681468 (-)
G156228 NA non-coding downstream 392484 16066669 ~ 16071528 (-)
G156225 NA non-coding downstream 400940 16062733 ~ 16063072 (-)
G156207 NA non-coding downstream 463973 15994787 ~ 16000039 (-)
G156203 NA non-coding downstream 516485 15947208 ~ 15947527 (-)
G156113 NA non-coding downstream 848225 15615562 ~ 15615787 (-)
G156344 NA non-coding upstream 187571 16674798 ~ 16676047 (-)
G156378 NA non-coding upstream 377871 16865098 ~ 16922863 (-)
G156668 NA non-coding upstream 1645102 18132329 ~ 18137505 (-)
G156670 NA non-coding upstream 1651292 18138519 ~ 18144775 (-)
G156696 NA non-coding upstream 1946379 18433606 ~ 18434245 (-)
AMCG00006083 NA other downstream 1847 16454284 ~ 16462165 (-)
G156206 klhl26,LOC107680559,LOC107597147 other downstream 506922 15954076 ~ 15957090 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other downstream 972370 15433432 ~ 15491642 (-)
AMCG00006102 slc5a5 other downstream 1456033 14998500 ~ 15007979 (-)
AMCG00006043 NA other downstream 1679732 14782506 ~ 14784280 (-)
AMCG00006118 NA other upstream 18137 16505364 ~ 16521689 (-)
G156341 NA other upstream 164313 16651540 ~ 16680772 (-)
AMCG00006127 NA other upstream 460770 16947997 ~ 16963650 (-)
G156907 NA other upstream 2787973 19275200 ~ 19293820 (-)
AMCG00006201 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 other upstream 2961704 19448931 ~ 19463205 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_08736175_08742487 PTBP1B, PTBP1, PTBP1A coding CI01000004 null 8736175 ~ 8744387 (+)