AMCG00006184 (LOC108437281,LOC105889513)


Basic Information

Item Value
gene id AMCG00006184
gene name LOC108437281,LOC105889513
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 19239365 ~ 19269061 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006184
ATGAGCGAGCCCAGAGGAGTGTGCAGGACAGTGCTGCGCATCGCCTGTCAGCTGCTGTGGCTGGCTGGTCTGGTTCTGGGCCTGAGCGGAGTCTATCTTCTCTTGAAGTACCTGAACTGTGGCCTCTTCTTCCATAACATCTACATTATCTTTCCTGCGGTCCTGGCCATTGTGGCTGCCGGCTTCCTCCTTGGCGCAGGAACAGTGGGCTGCTGGGTGTCTGGAAAGGAGTCTCCATGTCTGCAGGGTTTATTTGTGTATCTGCTCATTGCTGTATTCTGCCTGGAGGCTACGGCAGCAGTGTTGGcttacataaacataaacaagGTTGATTCAGAACTGTCTCCGTTCAAGAGCATCTTTCAGAAGTACAATGGCAGCAGGCAAGATCCTGACACTAGCACAGTGGATGCAATACAGAAAGAggGTTGCCAGGTGAAGCTGGAGGTTGCATTAGTCTTTATTCTGCACCTTATCATCATCTTGACTGCTGTGGTAGCTGTGTTCCAGCAGCAGATTCCGGTCGTGTTCATTGTTGGGAGAAGCCGCAGCTCTGAATTAAAACCGTCGACATCCGAGACGAGGCAGAAGGATAATCTGTTCGACCTAAAACAGCACCGGAGTTACGGAGAAACAGATTCGGGATCTaCGTTGAAAGTTGATGCAGCCTTTCAGGAAGTTTATGACATGTCTAACGGTTACGAAGATCACATGGCAGATGAAGCAAAGGATGCCAAAACGAACCTGATCGTCAATTACCTCCCCCAGAACATGACCCAGGATGAGCTGCGTAGTCTTTTCAGCAGCATCGGGGAGGTGGAGTCTGCCAAACTCATCCGCGACAAAGTGGCAGgcCACAGTTTAGGGTACGGATTTGTTAACTATGTTAACCCTAGTGATGCAGAAAGGGCAATCAATACACTCAATGGGCTGAGACTACAGTCTAAAACTATCAAGgTTTCATATGCCCGGCCGAGTTCTGACACCATTAAGGATGCAAATCTGTACATTAGTGGCCTGCCCAAGACTATGACACAGAAAGATGTTGAAGATATGTTCACACGATATGGCCGTATAATTAACTCGCGTGTCCTTGTAGACCAGGCTTCAGGCTTGTCTCGCGGCGTCGCCTTCATTCGCTTCGATAAAAGAGCCGAAGCCGAGGATGCCATCAAAGACTTGAATGGTCAGAAGCCCCCAGGTGCGACGGAGCCCATCACAGTGAAGTTCGCCGCCAACCCCAATCAGGCCAAGAACTCGGCCCTGCTCTCACAACTGTACCACTCGCAGTCCCGGCGCTTTGGGGGCCCTGTCCACCACCAGGCACAGAGGTTCAGGTTCTCTCCAATGAGTGTCGACCACATGAGCGGCCTCTCTGGTGTCAACGTCCCTGGGAACTCCACTTCTGGCTGGTGCATCTTCATCTACAACCTTGGGCAAGACGCGGATGAGGGAATCCTCTGGCAGATGTTCGGCCCCTTTGGTGCGGTCACCAACGTCAAAGTGATCCGCGATTTTAACACCAATAAATGTAAAGGTTTTGGTTTTGTGACCATGACAAACTACGAAGAGGCTGCTATGGCCATCGCCAGCCTCAATGGTTACCGCCTTGGGGACAAAATCTTACAAGTTTCGTTCAAAACCAGCAAATCTCACAAGTAAATCGCTTGCTCACATGTTttctagaaaacaaacaaaaaaaaaaaaaaaagttgacacagttgaaaaggcattttttttgttttgttagtgtaaTATCCATTCTGCGCCAATTTCACGTGTTTTCTTTGTCCTAGTCTATAGGAAAGTGTAGGAAGATTTTTTTGATACTCTGGGATGCAACTAAcgtgttcaaatgttttttgagaGATCCCACAACCTATTGACCAATTctgagtttttaaattaatttgtccGTCTGTGATGCTAGAGTACAGAATTATACATGTGCCATATGCATGGTAAACACACAGCATGTGATGTCTCTAAGGCTCTGATTCTCTCTGTACTGTCATTAGTTATGGTCTGGCTACTCTTCACACTGGATATAGGTTCAGGTTACAGATGCCTTAACTCCCCACCCTGCCCTTCACATCTGCCCCTCTTCCCCCAAAACATACTTAACGTGAAAGTTTCAAAGTGAACTACCAAGACCTTGGTAGATTAAAGATCTCCCACTAATACTGGAATCAGAGTTCTTGTGAAGGCACAGCATGCTGCTGCTCAATTAAACAGATCCTAAGGAGGTGTGGCATTAGGAAATTGCATTGGAGCCAGCGAGATCATTTGTTTTAAGTTCGATTTTGAAAGGGACCTAGTTAGATCCAGATTATTCCAGAAGGACCAAAGATGGAAGAACTTAAATTGAGAGGGTTATTTGAGGCCCCAGAGATAATCCTGACATGCAAAATCCCACAGAGATGAGTCTCAACAGTGCGAATAGGTACTAATTTAATTTCTGCTACAAACATTTGAGCATCGGAGTTTCACTGCATCCCTTCTAGCTggttccattttattttgttttaaatagggCTTTATGTTAATTGATTCTCTAttgagaaaactgaaaataaagtacttcagcttttttctttttccatgcAGTTTAGTTGTTAACATACAaaatctttgtttaaaatagatttaaaactaATCCCAAGTTTCTGGAAACTGCCTTGAGACATTTTGGTTATGttaattttcttttgcttttttgtgtttcctttgttttgtttgattgttttacttttgcatttattatgatcattaaatttgattttgttttgctgaacatttttgtttggttttttgttttcggtttaacattttctttgctcttttggttttgtttaatttatttctttggTAGGTGTTTAGAGGGCCAGCAGAAGAATGGGGACATAATCAACCATGGTCCTTGACCTGAACAGGCAGCACACATGTTGTGGTAGTCGGGAGAAGTGGAGAACGCAGTCCAGCGGCTTACTTTCCCTTATTAAAGGCAGTATGTGTTGTTGCAGGGGattataaatagtattttaaatgtacctttGCCTcaataaggaaaatattaagCAGAAAGTCGAAGATTTCTGTGTTTACTGCAGGACCAAAAATCAATGGAAGGATAAAGTGCAGAAAGATGGTAAAAACAGCTGTTCTTCCCTTTTCCACAACCCTGtggcttttattttagttttataaaatgtatagtttaagTTCCTAAACCAGTCCAACCAATTTCCACCCAAGAAGACCTTTATCAATAATTGTAAGAAGGccttatattttttattatttctaaatctGATGTAGATCTCCACACACGAGGATTTAGTCTTTACCCAACTCTGAAGAACCAAAATTGGTACCTCCCCTTACGTTGAGCTTCAGCCATTGAAATGCCAATATGTTGACCTTGAACGACTTGATTTCCAGTGTCCCAAATGCACTATAGGTCAGGTTTCTTATTGGTAATTACTACAGACCTTACAGTCTGTCAATTATCAATTGAGACTTTCCAGTTAATTGTCATTGGACTAGGATATAGATGCTTAAAAACGGCGGACGTGTTACTTTTTCCTTGGAAGTGAGGATTTGAAAgtgtttgcaaataaataaagctacTGGGATGTGAGTTAGTTCTGCCCAGTCCATTGCTAAAGTTTGGTATCCcaatcatgcattttttaacactGAATGAATTGcttattacattttagattttaattttgctttttcaaagtAGTTCAAACATGACTAAATTTTAACTTACCCAATTTGAGGATTTaaaaagtttgtgtgtgtgtgtgtatgtgt

Function

NR:

description
PREDICTED: ELAV-like protein 1 isoform X3

GO: NA

KEGG:

id description
K13088 ELAVL1, HUR; ELAV-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006184 True 3822 mRNA 0.42 13 19239365 19269061

Neighbor

gene id symbol gene type direction distance location
AMCG00006166 gipc3,LOC106574151 coding downstream 122778 19081039 ~ 19116587 (-)
AMCG00006161 myo1f,LOC108413823,LOC108264988,LOC105011638 coding downstream 352222 18853693 ~ 18887143 (-)
AMCG00006172 NA coding downstream 387286 18833330 ~ 18852079 (-)
AMCG00006171 NA coding downstream 417959 18814417 ~ 18821406 (-)
AMCG00006160 mllt1,LOC108432507 coding downstream 458972 18774925 ~ 18780393 (-)
AMCG00006199 NA coding upstream 33599 19302660 ~ 19306140 (-)
AMCG00006195 LOC102214220 coding upstream 555764 19824825 ~ 19859369 (-)
AMCG00006196 ptprd,LOC107559826,LOC107717167,LOC107744639 coding upstream 602831 19871892 ~ 19874931 (-)
AMCG00006197 NA coding upstream 610989 19880050 ~ 19881917 (-)
AMCG00006194 LOC106613507,LOC106574153 coding upstream 626364 19895425 ~ 19922471 (-)
G156862 NA non-coding downstream 207031 19032130 ~ 19032334 (-)
G156847 NA non-coding downstream 283050 18956103 ~ 18956315 (-)
G156846 NA non-coding downstream 283330 18955723 ~ 18956035 (-)
G156812 NA non-coding downstream 395449 18840801 ~ 18843916 (-)
G156791 NA non-coding downstream 497156 18741351 ~ 18742209 (-)
G156929 NA non-coding upstream 121016 19390077 ~ 19390399 (-)
G156932 NA non-coding upstream 130373 19399434 ~ 19399637 (-)
G156935 NA non-coding upstream 133121 19402182 ~ 19413340 (-)
G156946 LOC107742786 non-coding upstream 210407 19479468 ~ 19480437 (-)
G156947 uhrf1,LOC107561590,LOC107742786,LOC107549364 non-coding upstream 216489 19485550 ~ 19489841 (-)
AMCG00006127 NA other downstream 2275715 16947997 ~ 16963650 (-)
G156341 NA other downstream 2558593 16651540 ~ 16680772 (-)
AMCG00006118 NA other downstream 2717676 16505364 ~ 16521689 (-)
AMCG00006083 NA other downstream 2777200 16454284 ~ 16462165 (-)
G156206 klhl26,LOC107680559,LOC107597147 other downstream 3282275 15954076 ~ 15957090 (-)
G156907 NA other upstream 6139 19275200 ~ 19293820 (-)
AMCG00006201 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 other upstream 179870 19448931 ~ 19463205 (-)
G157059 NA other upstream 1440738 20709799 ~ 20712216 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000207_00178321_00183300 HUG, ELAVL1 coding CI01000207 null 177921 ~ 184597 (+)