AMCG00006196 (ptprd,LOC107559826,LOC107717167,LOC107744639)


Basic Information

Item Value
gene id AMCG00006196
gene name ptprd,LOC107559826,LOC107717167,LOC107744639
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 19871892 ~ 19874931 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006196
CTCCTTAAGGACATCAACCAGCGCCAGCGACACAGGCGGAGCATGCGGCATCTTCGACAGCTTGACATTCAGAAGCCCTACATTGCCGCCTGCTTCAAGCCCACATCACTTCCCTCCTACTTCACAGTAGGAAACCAGATGGATTACAATGGCTATGAAAACAGAGCCCTGGAGCCTGGACAGGAATATGTCTTCTTCCTTCTGGCAGAGCTTAATGTGACCACAGTGAAAATGTTTGCCGCCAGCCCATACACGGACACAGTGACCGCTCCAGAAGTGCACCCCCAGCCCATGGACAATGGAGATGGGCTGATTTGGGTGGTGGGACCTGTGTTGGCCGTGGTCTTCATCATCTGTATTGTCATCGCCATCCTGCTCTACAAGAAcAAACGGAAGGAGTCTGAGCCACGCACTAAGTGTCTCCTGAACAATGCCGAAATCACGCCCCACCACCCTACGGATCCCGTAGAGATGAGAAGAATCAACTTCCAGACACCAGGTACCACTTTTGCCCATAACAGGGCAGCACAAATGCTAGGAAATGCAAACGTGGGAGCTTTGGGTCAAGCT

Function

symbol description
ptprd Predicted to enable cell adhesion molecule binding activity; protein tyrosine phosphatase activity; and signaling receptor binding activity. Involved in regulation of presynapse assembly; synaptic membrane adhesion; and trans-synaptic signaling by trans-synaptic complex. Located in extracellular exosome. Is active in glutamatergic synapse.

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase S-like isoform X15

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006196 True 570 mRNA 0.52 3 19871892 19874931

Neighbor

gene id symbol gene type direction distance location
AMCG00006195 LOC102214220 coding downstream 12523 19824825 ~ 19859369 (-)
AMCG00006199 NA coding downstream 565752 19302660 ~ 19306140 (-)
AMCG00006184 LOC108437281,LOC105889513 coding downstream 602831 19239365 ~ 19269061 (-)
AMCG00006166 gipc3,LOC106574151 coding downstream 755305 19081039 ~ 19116587 (-)
AMCG00006161 myo1f,LOC108413823,LOC108264988,LOC105011638 coding downstream 984749 18853693 ~ 18887143 (-)
AMCG00006197 NA coding upstream 5119 19880050 ~ 19881917 (-)
AMCG00006194 LOC106613507,LOC106574153 coding upstream 20494 19895425 ~ 19922471 (-)
AMCG00006193 LOC107744650,LOC103355422 coding upstream 109748 19984679 ~ 19988411 (-)
G156979 NA non-coding downstream 66721 19804948 ~ 19805171 (-)
G156971 NA non-coding downstream 154213 19717173 ~ 19717679 (-)
G156947 uhrf1,LOC107561590,LOC107742786,LOC107549364 non-coding downstream 382051 19485550 ~ 19489841 (-)
G156946 LOC107742786 non-coding downstream 391455 19479468 ~ 19480437 (-)
G156935 NA non-coding downstream 458552 19402182 ~ 19413340 (-)
G157011 NA non-coding upstream 353655 20228586 ~ 20229103 (-)
G157020 NA non-coding upstream 479532 20354463 ~ 20354668 (-)
G157030 NA non-coding upstream 491658 20366589 ~ 20366830 (-)
G157038 NA non-coding upstream 544043 20418974 ~ 20419284 (-)
G157042 NA non-coding upstream 575541 20450472 ~ 20486674 (-)
AMCG00006201 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 other downstream 408687 19448931 ~ 19463205 (-)
G156907 NA other downstream 578072 19275200 ~ 19293820 (-)
AMCG00006127 NA other downstream 2908242 16947997 ~ 16963650 (-)
G156341 NA other downstream 3191120 16651540 ~ 16680772 (-)
AMCG00006118 NA other downstream 3350203 16505364 ~ 16521689 (-)
G157059 NA other upstream 834868 20709799 ~ 20712216 (-)

Expression


Co-expression Network