G153178


Basic Information

Item Value
gene id G153178
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5487309 ~ 5489599 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU192894
attggaaaaaaattatattttggaagaacTCACTACAGAAGGTGACAATTTCCAttacatgaaaaatatacatcagtATTTTGTCTTTGTACATTAGGCAAGAAAACTGCAGTAGTCCAGAgccagaataaaataaatgaaagaaaacaaagggaaaagggaaaaaaaaaaaaaaaaaagacgcgCACgcatacacactctcacactcacatcAGCATCTTCAATACCAAACCCAGAAACTGCCCACATGAACACCTACAGTTAACGCATGCATAATAATCCTATCTAGGACACCACAAAAACAagcttgtaaaaataatttgcttaattagcTGGATATGGGGCAAGTCGGGCACAGGACGGCCCGATTCTCACCTTGacgtttaaaattaaaatcggTGCACCACagagagaagaacaaaaaacaattattgctacactaaacttttttttaattttttctttgttttaatcgTCCAGGCCTAAAcaaagggtttaaaaaaaaaaatccaaaacaaacacatggaaGGGTGCATGGCAAAGTCTCATTGGGTTTCTTGCACATCCGCTTTAGTTCAATGCAGGGTGTATTACCAAGCAATTCAACAGGAGGCACTTCTGAAAAAACGAAATTCAACTACAAACAGGAGaaatcaaaaggaaaagaagCTCTTCTCGCGCATGCAGCACCTCTGATCTGAATCCACAAGTGCACCTCCGATCTCTGCCGGTACTTACAAGGCCGACTCGGCACAATCACACCGGAAAACCCTTTGCCAAAGCATGAGCACCtcgtgtttaaaacaaaatggagttaaaatggtttaattttataGAAGTTCCACGGAAGGGGCAGAGAGCAAGAAAGGATCAAACATGGCAAACGCATGCTTAAAGCTTTTTTTGTCCCCTCAAGGCGATTAAAGCTCCAAActgatgcattgttttaattccaCTGTCATTTTAGAACTTGCCAATTAGAGGTTCTTTCAATGAATTTCTACCTGGTTTTAATTATTCCTTTTACAAGGCTTGCTTTTAAAGTAACCTGTAACAGAAGTAATGCACATAAGAGAAGGGTAGTGGGAGGACTAAAATCTTCAAGAATTTACAGGATTCATATTCTAACTACATAAGCGCTATTTATTTGGTACTATATGTGTCGCTGGGTGAATATGAACAGTTTATATATTATCCGGTTCATGTTTGTGCTATGTACAGGTCTTTACAATTCTTCCTGAAGGTTGAAGCAGTCCGTTAGACTTCAAAAAAATTGCGTGATCATCTTTTTAGGTTGGCACTTGGCGAGGCTTTCGTCAGCGTCGGCGACTGGCTTTTGCGTTCGATTGCAGCCGGTTTGGCCAGTCTGTGTTCTGCCAGCTTTCAATAAGGACAAGTCTGGCGATAGTTGGGTAGAGTGCAGGAGAACAGTGCCATGTTGTTTCTCAATTGGAGACCTGAAAAAATGTGAAGCTACAAGCTGCTGGATTAACATCACTCAAAGGCAGTCTCTTGGCTCTTTCTTACACAGCGAGCaactttccttttgaattctCCATTTCGGTCTTCCCTCCATTCTTTCTGTAAGAACATAAAGTGACTATTTTAAACTACTACATTTGATGCATTTATTCAAGTAGCAGAATTACAACATTCTCTAAAGCAACTGCATACGTCAAACTATTTGGGTTCACTATTATATACAGTTTTCTGCCAtcttatgtaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192894 True 1729 lncRNA 0.39 2 5487309 5489599

Neighbor

gene id symbol gene type direction distance location
AMCG00005575 NA coding downstream 19473 5460919 ~ 5467836 (-)
AMCG00005576 LOC106602867,LOC107597455 coding downstream 42699 5444161 ~ 5444610 (-)
AMCG00005574 LOC106602867 coding downstream 81410 5372461 ~ 5405899 (-)
AMCG00005616 NA coding downstream 139041 5344509 ~ 5348268 (-)
AMCG00005620 NA coding downstream 149781 5317898 ~ 5337528 (-)
AMCG00005625 NA coding upstream 18653 5508252 ~ 5513394 (-)
AMCG00005606 NA coding upstream 177261 5666860 ~ 5709455 (-)
AMCG00005605 NA coding upstream 259177 5748776 ~ 5751438 (-)
AMCG00005610 LOC101160255,LOC103021402,LOC100700540,LOC105025792 coding upstream 430601 5920200 ~ 5931156 (-)
AMCG00005611 NA coding upstream 447216 5936815 ~ 5947317 (-)
G153143 NA non-coding downstream 131612 5353353 ~ 5355697 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding downstream 134964 5351353 ~ 5352345 (-)
G152942 NA non-coding downstream 955577 4531440 ~ 4531732 (-)
G152915 NA non-coding downstream 1186911 4292030 ~ 4300398 (-)
G152894 NA non-coding downstream 1226997 4257221 ~ 4260312 (-)
G153236 NA non-coding upstream 158759 5648358 ~ 5648709 (-)
G153248 dhx33 non-coding upstream 251893 5741492 ~ 5748572 (-)
G153272 NA non-coding upstream 311049 5800648 ~ 5800906 (-)
G153313 NA non-coding upstream 558531 6048130 ~ 6048470 (-)
G153324 NA non-coding upstream 579188 6068787 ~ 6069014 (-)
G153130 NA other downstream 185111 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 1194438 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 1618100 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 1854597 3606961 ~ 3632712 (-)
G152645 NA other downstream 2396595 3071860 ~ 3090714 (-)
G153342 NA other upstream 591636 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 742560 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 1000656 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 1619619 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 2295955 7785554 ~ 7788321 (-)

Expression


Co-expression Network