AMCG00005539


Basic Information

Item Value
gene id AMCG00005539
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4284717 ~ 4292871 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005539
ATTGACTTTGACTGCATCAACACCCACAAAGACCTGGGGCTGGGAGACTCCTTCTACAGGATTATGAAGACCTACGGCCACAGCAAGCTCTGCAATGTGCTCTTCACCCATGAGCTGGCCAAGAGGCTGCAGGGCACCAACGTCACCTGCTACACGGCCTTCGAACCCATTGGCAGACTGTTTGCAGTGGACGCAGAGGCCGGCGCCCAGACCACCCTGCACTGTGCGCTGCAGGAGAGCATTGAGCCGCTCAGCGGGCGCTACTTCTCCAACTGCGCCGTGCAGGAGGTGGGAGCCAAGGCCCGGGATGACGCCGTGGCCAAGAAGCTGTGGGAGCCCGCCTCTCCTCCAGGGGGCAACACTGGCATTGGGAAGGCCACTGCTGTGGACCTGGCCAGGAGAGGGGCGAGGGTTATCCTGGCCTGCCGCAATAAGCAGAGGGCAGAGGCTGCAGTCCTCGACATCAAGAAGGTGAGACACACAGATAAGAACAAGTGTGGCAACATTAAAATGCTGCTTGACAGGAATTATCCGCTCCAGCAGCAGGCAGGTGAGCAAGAAGTGGCCCAGGTGGTTGACTCCAAACATCAGACCGAAGCCATCTACAGTCCTGCCAGCGTCAACCACACCTACACCAGGAGATCAGAAAAGTTGGCCCTGATTACATAA
>TU192573
CTTAAGCACCAATAACACATTCAGGCATTTCCCCAGCGAGCAGCTGACAATACAGAGAGAAGAGACTGATCACTAGAAAGAAAACCATTCCTGAAAATGGTCTTTATTTTGCTAGCTGTGTCTGGGCTTGTCGTTTGCCTTTATCAGTGCATATACTATGCTTTCTTTTCAGGGGTTTTCTGTAAAAGTCCTACCAGGCTGCAGGGAAAGACAGTAATCATAACCGGGGGCAACACTGGCATTGGGAAGGCCACTGCTGTGGACCTGGCCAGGAGAGGGGCGAGGGTTATCCTGGCCTGCCGCAATAAGCAGAGGGCAGAGGCTGCAGTCCTCGACATCAAGAAGGACAGTGGCAGCAGTGCGGTGGTGTTCATGCAGCTGGACCTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005539 True 669 mRNA 0.58 4 4284717 4292871
TU192573 False 389 TUCP 0.51 3 4288665 4289892

Neighbor

gene id symbol gene type direction distance location
AMCG00005568 NA coding downstream 264971 4004263 ~ 4019746 (-)
AMCG00005561 cuedc1,LOC107682807,LOC107587359,LOC107746650,LOC107672109,LOC107757269 coding downstream 463375 3807765 ~ 3821342 (-)
AMCG00005552 LOC106567758,LOC106603288 coding downstream 592610 3652635 ~ 3692107 (-)
AMCG00005524 NA coding downstream 680362 3583401 ~ 3604355 (-)
AMCG00005497 msi2b,LOC105028669,LOC106603292 coding downstream 716213 3566837 ~ 3568504 (-)
AMCG00005547 LOC107751257,LOC107695157,LOC107603166 coding upstream 241269 4534140 ~ 4536045 (-)
AMCG00005549 acaca coding upstream 250455 4543326 ~ 4544200 (-)
AMCG00005548 NA coding upstream 254206 4547077 ~ 4551659 (-)
AMCG00005555 acaca coding upstream 268062 4560933 ~ 4596482 (-)
AMCG00005541 NA coding upstream 385779 4678650 ~ 4696115 (-)
G152894 NA non-coding downstream 24405 4257221 ~ 4260312 (-)
G152853 NA non-coding downstream 291196 3989919 ~ 3993521 (-)
G152815 NA non-coding downstream 492273 3788208 ~ 3792444 (-)
G152793 NA non-coding downstream 559345 3698811 ~ 3725372 (-)
G152798 NA non-coding downstream 566281 3714683 ~ 3718436 (-)
G152942 NA non-coding upstream 238569 4531440 ~ 4531732 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding upstream 1058482 5351353 ~ 5352345 (-)
G153143 NA non-coding upstream 1060482 5353353 ~ 5355697 (-)
G153178 NA non-coding upstream 1194438 5487309 ~ 5489599 (-)
G153236 NA non-coding upstream 1355487 5648358 ~ 5648709 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 415508 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 652005 3606961 ~ 3632712 (-)
G152645 NA other downstream 1194003 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 1394269 2872506 ~ 2890448 (-)
AMCG00005517 NA other downstream 1874470 2406525 ~ 2410247 (-)
G153130 NA other upstream 1007898 5300769 ~ 5302198 (-)
G153342 NA other upstream 1788364 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 1939288 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 2197384 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 2816347 7109218 ~ 7145807 (-)

Expression


Co-expression Network