AMCG00005552 (LOC106567758,LOC106603288)


Basic Information

Item Value
gene id AMCG00005552
gene name LOC106567758,LOC106603288
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3652635 ~ 3692107 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005552
TTCACAGCCAAGTCTTTAAGGGAACAGAGCCAGCCCGACTCGCCCGAGTGCGCTGGAGTCAGAGAGCAAGATGACGATAATTCATTGAAGTCCAGAAGAGCACAGCCACTTGGAGCTTCGCAACTTCCAATCAAAGCAGGACAACAGAACACCCACACCAAAGTCAGTACGGAGCACAATAAGGAATGTCTCATCAACATCTCCAAATACAAGTTTTCCCTTCGGATATTTGGAGAAGCTGCAGAGAAGAACCTCTACCTCTCACAGCTCATTATACTGGACACACTGGAGAAGTGCCTGGCTGGGCAACCCAAGGACTGCATGCGGCTGGACGAGACGATGCTGGTGAAACAGCTGCTGCCCGAGATCTGTCACTTCATCCACACATACCGCGAGGGCAACCAGCACGCGGCCGAGCTGCGCAGCTCCGCCTCGGGGGTCCTCTTCTCGCTCAGCTGCAACAACTTCAACGCCGAACTCACGGTGTGCTCTGAAGACAATGTGGATGTTCATGACATCGAGCTGATCCAGTACATCAATGTGGACTGCTCCAAACTCAAAAGACTGCTCCAAGAAACGGTGTTTAAATTCAAGGCCCTGAAGAAACCTGCACAGCTGAGTGTCATCAACAGCCTGGAAAAGGCTTTCTGGAACTGGGTGGAGAACTACCCTGATGAGTTCACCACACTGTACCAGCGCCCGCAGACGGACATGGCAGACTGCGGGGAGAAGCTGTTCGACCTGGTGGACAGTTTTGCCGAGAGTGCCAAGAGGAAGGCAGCGGTCTGGCCTTTGCAGATCATCCTCCTTGTCCTCTGTCCTGAGATCACACAGGACATCTCCAAAGAGGTGGTGGAGGACAGTAGGGTCAACAAGAAGCTGTTCCTGGAGAACCTGCGCAAGGCCTTGGCGGGACACGGGACCAGCAAGCAGCTGACGGAGAGTGCGGCCATCGCGTGTGTCAAGCTCTGCAAGGCCTCCACCTACATCAACTGGGAGGACCACtctgtcatcttcctcctgGTGCAGTCCATAGTGGTGGACCTCAAGGCCCTGCTCTTCAACCCGACCAAACCCTTCTCCCGAGGGGCGGGCAGCCAGAACGCCGACATCGACCTCATGATTGACTGCTTCGTCTCCTGTTTCCGCATAAACCCCCACAACAACCAGCACTTTAAGGTCTGTCTGGCCCCCACCTCTCCGCCCACCTTTCACTTCGTTCTGGTCAACTCCCTGCACAGAATCATCACAAACTCTCCTCTGGACTGGTGGCCGAAGATCGACGCGGTTTACGGCTACTCGGGGGAGCTGCGAATTATGTTCTCCGAGACGCTGGGCCGTGTGATACAGGGCTGCAGTACCCACGCTCCGTTACGCATGACGCCGAGTCTCACGTTCAAAGAGAAAATGACCAGCCTTAAGTTTAAAGAGAAAACCACCGAGATGGACACCAGGAGTTATAAGTATTTGTTGCTGGCCGTGGTGAAGCTGATTCATGCCGACCCTAAGCTGATGTTACATAACCCCGGCAAGCAGGGCCACGAGATCCAGAGCAGCACGGCGGAGCTCATCACGGGCCTGGTGCAGCTCGTGCCCCAGGCCAACATGACGGAGATCGCACAGGAGGCCATGGAGGCTTTGCTAGTCTTACACCAGCCAGAAACCATAGAGCTGTGGAACCCTGATGCACCCATAGAAACCTTCTGGGAAATAAGCTCACAGGTGCTGTTCTTCATCTGCAAGAAACTCATCGGCCATCAAATTATTAACAGCACAGAAATCCTGAAGTGGCTGCGAGAGATCCTGATCTGCAGGAATAAGTTCCTTCTCAAGAACAAGGCCACCAGACCTGATTccctttccctgtgtgtgtgtgaatgccaGGAGAGAGCCACCCTGGGCAGCGGCATCCCCATCTGCCGGCAGGCCCAGACCAAGCTGGAGGTGTCCCTGTACATGTTCCTGTGCAGCCCCGACATCGAGGCCGTGCTGGTGGCCATGTCCTGCTTCCGCCACCTGTGCGAGGAGGCCGACATCCGCTGCGGGGTGGACGAGGTGTCCGTGCAGAATATCCTGCCCAACTACAACACCTTCATCGAGTTCGCCTCCGTCAGCAACATGATGTCAACTGGCCGGGCAGCCCTGCAGAAGAGAGTCATGGCCTTGTTGCGAAGGATAGAGCACCCGACCGCAGGAAACACAGAGGCTTGGGAAGACACATATGCAAAATGGGACCAAGCTACTAAGTTAATACTTAATTAtccaaaaactaaaattgagGATGGCCAGGTGACAGAAAGTCTCCATAAGACAATTGTTAAGCGGCGAATGTCACATGTAAGTGGGGGTGGCTCTATAGACTTGTCTGACACGGACTCCTTGCAGGAATGGATCAACATGACGGGATTCCTGTGCGCTCTGGGCGGGGTGTGCCTGCAGCATCGCAACCCCCCCGGACCGGCCACTTACAGCCCGCCCATGGGCCCCCTCAATGAACGCAAGGGCTCCATGATTTCAATGGGCTCGAGCGAGGGCAGTGTGGAGACCCCCCTCAACAAGTTCCTGGACCGTTTGCTCTCACTCATGGTGTGCAACCACGAGAAAGTGGGCCTGCAGATCAGAACCAATATCAAGGACCTTGTGGGCCTGGAGCTCAGCCCCGCTCTCTACCCTATGCTCTTCAACAAGCTCAAGAACAGCATCAGCCGCTTCTTCGATGCACAGGGACCCGTCCCGATCAATGACACTAACACCCAGTTTGTGGAGCAGACCATCGCCATCATGAAGAACCTGCTGGACAACCACACGGAGGGCAGTTCAGAGCACCTGGGCCAGGCCAGCATTGAGACCATGATGCTCAACTTGGTCAGGTACGTCCGCATACTCGGCAACATGGTGCATGCTATCCAGATCAAGACAAAGCTGTGTCAGCTGGTGGAAGTCATGATGGAGCGCAGGGACGACCTCTCCTTCTGCCAGGAGATGAAGTTTCGGAACAAGATGGTGGAGTACCTGACAGACTGGGTGATGGGGACGTCCAATCAGGCAGCGGACGATGATGTCAAATGTTTGACCAGGGATCTCGACCAGGCCAGTATGGAGGCAGTGGTGTCACTTCTTGCCGGTTTGCCTCTGCAGCCAGAGGAGGGTGACGGTGTGGAGTTGATGGAGGCAAAGTCCCAGCTCTTCCTGAAGTACTTCACCCTGTTCATGAACCTGCTGAACGACTGCAGTGAGGTGGAGGACGATGGGCAGCAGACAGCGGGACGGAAGCGCGGGATGTCCCGTCGCCTGGCCTCCCTGCGCCACTGCACTGTCCTCGCCATGTCCAACCTCCTCAACGCCAACGTGGACAGTGGGCTAATGCACTCCATAGggTTGGGCTACCACAAGGACCTGCAGACGCGAGCCACGTTCATGGAGGTATTGACCAAGATCCTGCAACAGGGCACGGAGTTCGATACGCTGGCCGAGACGGTGCTGGCTGACCGCTTTGAGAGGCTGGTGGAGCTCGTCACCATGATGGGGGACCAGGGAGAGCTGCCCATCGCCATGGCTCTGGCCAACGTGGTGCCCTGCTCGCAGTGGGATGAACTGGCGCGTGTCCTAGTGACCCTGTTTGACTCACGGCACCTTCTCTACCAGCTGCTGTGGAACATGTTCTCCAAGGAGGTGGAGCTGGCCGACTCCATGCAGACGTTGTTCAGGGGAAACAGCCTGGCCAGCAAGATCATGACCTTCTGTTTCAAGGTCTATGGTGCCACCTACCTGCAGAAGCTCCTGGACCCCCTCCTGAGGGGGGTGATCACAACACCAGAGTGGCAGCAGATCAGCTTTGAAGTCGACCCCACCAGGCTGGAGCAGACGGAGAGTCTGGAAGAAAACCAGCGCAATCTGTTACAGATGACGGAACGCTTCTTCCTCGCCATCATCAACTCGTCCTCGGAGTTCCCCCCACAGCTGCGCAGTGTCTGTCACTGCCTGTACCAGGTTGTCAGTCAGCGATTCCCTCAGAACAGTATTGGCGCGGTTGGCAGTGCCATGTTCCTGCGATTCATCAACCCTGCCATCGTCTCGCCCTATGAAGCTGGGATTCTGGACAAGAAGCCCCCTCCCAGAATAGAACGGGGCCTGAAGTTAATGTCCAAGATACTCCAGAGCATTGCGAACCACGTCTTGTTTACAAAAGAAGAGCACATGAGACCTTTTAATGACTTTGTAAAAAGCAATTTTGATGCAGCAAGGAGTGACGGGAATGTGCTGGCTCTGCACCGACTGCTCTGGAACAACCAGGAGAAGATTGGACAGTACCTGTCGAGCAACAGAGACCACAAGGCGGTGGGCAGGCGCCCGTTTGACAAGATGGCGACTCTCCTGGCATACCTGGGTCCCCCGGAGCACAAACCAGTGGCCGACACGCACTGGTCCAGCCTCAACCTCACTAGCTCCAAATTCGAGGAGTTCATGACCAGGCACCAGGTGCACGAGAAGGAGGAATTCAAAGCTCTGAAGACCCTCAATATCTTCTACCAGGCAGGCACCTCCAAGAACGGCAACCCAGTTTTCTACTACATCGCCCGGAGGACCAGGTGCATAACCATGAGTACAGTAACTATTAAAAAAGACAAGCAGGAGAGCAACTGCGATGAGGAGGCTGCTGTGGTTTGCACAGACCTTACTTTCAAACAAGCGAATATTGAACAAGCTGCACTTTTGTTAGGGAATTGCTCTGCTTTTGCCTTCAGCAGCGTAGAAGATAACCCACAGTGCTCCGTCATTTTGAAAACCTGTAAGAAGTACGGCACTGGCACCCTCAAGAaaagtgtaacatttttttattcagtttctttcaGAGAGCACCGTCTTGTGGTCagtaataaatactttattagTGTGAGA

Function

NR:

description
PREDICTED: neurofibromin isoform X2

GO: NA

KEGG:

id description
K08052 NF1; neurofibromin 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005552 True 4899 mRNA 0.55 35 3652635 3692107

Neighbor

gene id symbol gene type direction distance location
AMCG00005524 NA coding downstream 48280 3583401 ~ 3604355 (-)
AMCG00005497 msi2b,LOC105028669,LOC106603292 coding downstream 84131 3566837 ~ 3568504 (-)
AMCG00005501 LOC108435815,LOC107756385,LOC107666187 coding downstream 287285 3349957 ~ 3365350 (-)
AMCG00005480 NA coding downstream 500716 3151044 ~ 3151919 (-)
AMCG00005479 NA coding downstream 646789 2992417 ~ 3005846 (-)
AMCG00005561 cuedc1,LOC107682807,LOC107587359,LOC107746650,LOC107672109,LOC107757269 coding upstream 115658 3807765 ~ 3821342 (-)
AMCG00005568 NA coding upstream 312156 4004263 ~ 4019746 (-)
AMCG00005547 LOC107751257,LOC107695157,LOC107603166 coding upstream 842033 4534140 ~ 4536045 (-)
AMCG00005549 acaca coding upstream 851219 4543326 ~ 4544200 (-)
AMCG00005548 NA coding upstream 854970 4547077 ~ 4551659 (-)
G152736 NA non-coding downstream 344204 3306686 ~ 3308431 (-)
G152665 NA non-coding downstream 450948 3201185 ~ 3201687 (-)
G152661 NA non-coding downstream 467950 3183821 ~ 3184685 (-)
G152652 NA non-coding downstream 492271 3160057 ~ 3160364 (-)
G152473 NA non-coding downstream 1207538 2415072 ~ 2445097 (-)
G152793 NA non-coding upstream 6704 3698811 ~ 3725372 (-)
G152798 NA non-coding upstream 22576 3714683 ~ 3718436 (-)
G152815 NA non-coding upstream 96101 3788208 ~ 3792444 (-)
G152853 NA non-coding upstream 297812 3989919 ~ 3993521 (-)
G152894 NA non-coding upstream 565114 4257221 ~ 4260312 (-)
AMCG00005525 LOC106567758 other downstream 19923 3606961 ~ 3632712 (-)
G152645 NA other downstream 561921 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 762187 2872506 ~ 2890448 (-)
AMCG00005517 NA other downstream 1242388 2406525 ~ 2410247 (-)
AMCG00005532 NA other downstream 1322951 2197354 ~ 2329684 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other upstream 158029 3850136 ~ 3869209 (-)
AMCG00005539 NA other upstream 592610 4284717 ~ 4292871 (-)
G153130 NA other upstream 1608662 5300769 ~ 5302198 (-)
G153342 NA other upstream 2389128 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 2540052 6232159 ~ 6234028 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002323 nf1b coding NC_007121.7 CM002894.2 37268854 ~ 37394957 (+)
grasscarp (Ctenopharyngodon idella) CI01000304_17980209_18006985 NF1B, NF1 coding CI01000304 null 17979485 ~ 18007006 (+)