AMCG00005491 (supt6h,LOC107603297)


Basic Information

Item Value
gene id AMCG00005491
gene name supt6h,LOC107603297
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2872506 ~ 2890448 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005491
ATGTCGGACTTCGTGGAAAGCGAGGCAGAGGAGTCCGATGAAGAGTACGACGACGAGGGGGACGTCCAGCCCAAGAGGACGAAGAAGTTTGTGGAGGTCGATGATGaagaggaagaggaggagaaccCGGAGGAGCAGGACGAGCATGGGAACCTGCTGGGGCTGATCGACGACGAtgtggaggaggatgaggaggaggaggaggaagaggaggacagGGGCGGGGGCGACAACAGCGACTCCGGGGAGGAGATCGGACACCGCAGGAGGAAGCGCAATTTTGACGATCGCCTGGATGACGACGATATCGACCTCATCGAGGAGAACTTGGGAGTGAAAGTGAAGAGGCAAAAGTTCCGTCGCGTGAGGAAGATGTCGGAcgacgaggacgaggaggaggaagagggacgCGAGGGCCACGAGAAGGACCTGATCGCCGAGGAGATCTTCACggatgggggggtggaggaCGGGGAGGCGATGGACGTGCCGCTCCACGGTGCTGAAgatgatgaggatgaggaagacGAAGAGTCGGATATCGATGACTTTATCGTGGATGATGATGGGCAGCCCCTTAAGAAACCAAAATGGAGGAAGAAGCTGCCTGGATACACAGACGCggccCTTCAGGAGGCCCAGGAGATCTTCGGTGGGGACTTTGACTTCGCCGAGTTCGACAACGAGGGCTACGACGatgctgaggaggaggaggaggacccAGACGACGAGGCCTGGGACCGACCCAAGAAGCAGACCAAGAAGAGAGTGGGCCGGCGCAGCATCTTCGAGATCTACGAGCCCAGCGAGCTGGAGAGCAGCCACCTGACGGACCAGGACAACGAGATCCGCTCCACCGACATGCCCGAGCGCTTCCAGCTAAGGGTGATTCCAGTCAAACCAGCGGAGGATGACGAGCTGGAGGAAGAAGCAGAGTGGATCTACCGCAACGCCTTCTCCACCCCCACCATTTCCATGCAGGAGAGCACGGACTACTTGGATCGTGGCTCCACCAACTTCAGCAGAAAGGGACCCAGCACCATCCAGAAGATCAAGGAGGCTCTGAACTTCATGAGGAACCAGCACTTTGAGGTTCCCTTCATCGCGTTCTACAGGAAGGAGTATGTGGAACCGGAGCTTAACATCAACGATCTGTGGAAGGTTTGGCAGTGGGATGAAAAGTGGACCCAGCTGAAGACCCGCAAGCAGAACCTGACCCGGCTCTTCCACAAGATGCAGGCGTTCCAGTTCGAGCAGATCTCCGCCGACCCCGACAAGCCCCTCGCCGATGGGATCCGGCCTTTGGACACTGCGGACATGGAGAGGCTCAAGGACGTCCAGTCCATCGACGAGCTGAGCGACGTGTACAACCACTTCCTGCTGTACTACGGCCGAGACATCcccaagatgcagaatgcagcCAAATCCAACAAAAAGAAACTCAAGAAAATCAAAGAAGTTTCCGAAGAGGACGACGGCCTTGCGAAGAAGTTTGGTCTGACCCCCGAGCAGTTTGGAGAGAATCTGCGCGACAGCTACCAGCGTCACGAGACGGAGCAGTTCCCCGCCGAGCCCCTGGAGCTGGCCAAGGACTACGTGTGCAGTCAGTTTGCCACTCCGGAGGCGGTGCTGGAGGGGACGCGCTACATGGTGGCCATGCAGATCGCCAGGGAGCCTCTGGTCAGACATGTGTTGCGACAGACCTTCCAGGAGAGGGCCAAGATCAACATCAAACCCACCAAGAAGGGCAAAAAGGACGTAGACGAAGCGCACTATGCCTACTCCTTCAAATATCTGAAGAACAAGGCAGTGAAAGAGCTGAACGGTGACCAGTTCCTGAAGATGTGCCTGGCTGAAGAGGAGGGCCTGCTGACCATCGATATCTGTATCGATCTGGTGGGGGTGAAAGGGTACGGTAGCGACCAGACCTACTTCGAGGAGATCAAACAGTTCTATTACCGAGACGAGTTCAGCCACCAGGTGCAAGAGTGGAACAGGCAGCGCACGCTGGCCATCGAGCGTTCCCTCAAGCAGTTCCTGTACCCTCAGATGGCCAAGGAACTCAAGAACAAACTCATCGCCGAGGCCAAGGAGAACATCATCAAGAGCTGCAGCAGGAAACTCTACAACTGGCTGAAGGTGGCACCGTACCGGCCGGACCAGCAGgtggaggaggacgaggacCTGATGGACGAGAACCAGGGCAAAGGCATCAGAGTGCTGGGGGTGGCCTTCGCGACTGGCAGAGACACCCCCGTGTTCTGTTCCCTCCTCAACGGTGACGGGGAGGTGCTGGATTTCCTGCGCCTGCCTTACTTCCTGAAGAGGAGGAATGCCTGGCgagaggatgagagagagaaaaagCTTCAAGACATCGAAACCCTAAAAAAGTTCCTTGTTAGCAAGAAACCTCATGTGGTGGCTGTTGCTGGAGAAAACAGAGATGCCCAGATGGTCATTGAGGACATCAAGCGCACGGTGAGCGAGTTGGAGCAGGAGGTCTCCATTCCCAGCATCGGGGTGGAGCTGGTGGACAACGAGCTGGCCATGCTCTACATGAACAGCAAGAAGTCCGAGTACGTTTTTTTGGCATTCTTTTTCCAGACGGACTTCAGGGACTACCCCCCCCTGCTGCGCCAGGCTGTGTCCGTCGCCCGCAAGATTCAGGACCCCCTGATCGAGTATGCGCAGGTCTGCAGCTCGGACGAGGACATCCTCTGCTTGAAACTGCATCCTCTTCAGGAACACGTGGTGAAGGAGGAGCTGCTCAATGCCCTGTACTGCGAATTCATCAACCGGGTCAACGAGGTGGGCGTGGATGTGAACCGAGCCATCGCCCATCCCTACACCCAGAGTCTGGTGCAGTATGTGTGCGGTCTGGGGCCCAGGAAGGGGTCCCACCTCCTCAAGATTCTCAAGCAGAACAACACGCGGCTGGAGAACAGGACACAGCTCGTCACCATGTGCCACATGGGGCCCAAAGTGTTCATCAACTGCGCCGGCTTTATCAAAATTGACACGGCATCTTTGGGAGACAGCACGGACTCCTACATCGAGGTGCTGGATGGGTCGCGGGTGCACCCCGAGACGTACGAGTGGGCGCGGAAGATGGCGGTGGACGCGCTGGAGTACGATGAGTCCGCCGAGGACGCCAACCCTGCGGGGGCGCTGGAGGAGATCCTGGAGAACCCAGAGAGGCTGAAGGACCTGGATCTGGACGCCTTCGcagaggagctggagagacagGGTTACGGCAACAAAGGCATCACGCTGTACGATATCCGAGCGGAGCTGAGCTGCAGGTACAAGGACCTGAGAGCGACCTACCGCCCCCCCAACACAGAGGAGGTCTTcaacctgctgaccaaggagaCGCCCGAGACCTTCTATATCGGCAAGCTCATTACCAGCGTGGTGACTGGAATCGCTCACCGGCGGCCACAGGGAGAAAGCTACGACCAGGCCATCAGGAACGATGAGACCGGGCTGTGGCAGTGCCCCTTCTGCCAGCAGGACAACTTCCCCGAGCTCAGCGAGGTCTGGAATCACTTCGACAGTGGCTCCTGTCCCGGCCAGGCCATCGGGGTGAGGACACGGATGGACAACGCAGTCATGGGCTTCATTCCCACCAAGTTCCTGAGTGATAAAGTGGTCAAGCACCCTGAGGAGAGAGTGAAGGTGGGAATGACCGTCCACTGCCGGATTATGAAGATCGACATCGAGAAGTTCAGCGTTGACCTCACCTGCAGGACGTCCGACCTGATGGACAAGAACAACGAGTGGAAGCTGCCCAAGGACACCTACTACGACTTCGACGCCGAGTCGGAGGACCTCAAGCTGGAGGAAGAGACCAAGAAGAAACAGCAGCGCACCACCTATATAAAGAGGGTGATCGCCCATCCGTCATTCCACAACATCAACTTCAAGCAGGCTGAGAAGATGATGGAGTCCATGGACCAGGGTGACGTCATCATCCGGCCCAGCAGCAAGGGGGAGAACCACCTGACCGTCACCTGGAAGGTGGCCGACGGCATCTACCAGCACGTGGATGTCCGGGAGGAGGGCAAGGAGAACGCCTTCAGCTTGGGACACACGCTGTGGATTAACAATGAGGAGTTTGAAGATCTGGATGAAATCACGGCCCGTTATGTTCAGCCAATGGCTTCTTTTGCACGTGATCTTCTTAGTCATAAATATTTCCTGGACTGTAATGGTGGAGACCGAAAGaaAATGGAAGAGCTTCTGGTCAAAGCGAAGAAAGAAAAGCCTACATTTATCCCCTATTATGTATCTGCTTGTAAAGAGCTGCCAGGAAAATTCCTGCTAGGATACCAGCCACGGGGCAAGCCAAGGGTAGAGTTTGTGACGGTAACACCTGACGGGTTCAGGTACAGATCACAGATGTTCTCCACTGTGAACGGCCTCTTCCGCTGGTTCAAGGATCACTACCAGGACCCGGTGCCAGATCTGACCCGTGCGGTGAACGCGCTCCCCCAGAACATGACGTCTCAGATGTTCAGCGCCATCGCCGCCGTCACGGGGCAGAACCAGAACCCCAACGCCACTCCGGCGCAGTGGGCGTCCAGCCAGTACGGCTACAGTGGCGGCAGCAGCGGCGGAGGAGGCGGCAGCAGTGCTTACCACGTCTTTGCCACCCCGGCCCAGCAGCCTATCGCCACTCCCCTGATGACCCCCAGCTACTCCTACACCACCCCCAGCCAGCAGGCCATCACCACCCCCCAGTACCCCAGCAGTGCCACGCCCCAGTCCTCCCACGGGCACCCGTCCTCATCCTCGTCTTCGTCCTCCCGGCACAGACAGCAGCCCAAGACGAACGCCCACACCGCCGTGGACTGGGGCAAGATGGCCGAGCAGTGGCTGCAGGAGAAGGAGGCGGAGCGGCGGAAACAGAAGACCAGGGTGACCCCGCGCCCCTCGCCCAGCCCCATGATCGAGAGCACGCCCATACTGAATTTGAAAGCTTCTGTTAAAGTGTGA
>TU192197
CAGATCTGACCCGTGCGGTGAACGCGCTCCCCCAGAACATGACGTCTCAGATGTTCAGCGCCATCGCCGCCGTCACGGGGCAGAACCAGAACCCCAACGCCACTCCGGCGCAGTGGGCGTCCAGCCAGTACGGCTACAGTGGCGGCAGCAGCGGCGGAGGAGGCGGCAGCAGTGCTTACCACGTCTTTGCCACCCCGGCCCAGCAGCCTATCGCCACTCCCCTGATGACCCCCAGCTACTCCTACACCACCCCCAGCCAGCAGGCCATCACCACCCCCCAGTACCCCAGCAGTGCCACGCCCCAGTCCTCCCACGGGCACCCGTCCTCATCCTCGTCTTCGTCCTCCCGGCACAGACAGCAGCCCAAGACGAACGCCCACACCGCCGTGGACTGGGGCAAGATGGCCGAGCAGTGGCTGCAGGAGAAGGAGGCGGAGCGGCGGAAACAGAAGACCAGGGTGACCCCGCGCCCCTCGCCCAGCCCCATGATCGAGAGCACGCCCATGTCCATCGCCG

Function

symbol description
supt6h Predicted to enable histone binding activity and nucleosome binding activity. Involved in negative regulation of histone H3-K27 methylation. Acts upstream of or within embryonic heart tube development; otic vesicle development; and somitogenesis. Predicted to be located in nucleus. Predicted to be part of transcription elongation factor complex. Predicted to be active in transcriptionally active chromatin. Orthologous to human SUPT6H (SPT6 homolog, histone chaperone and transcription elongation factor).

NR:

description
PREDICTED: transcription elongation factor SPT6 isoform X2

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0071599 otic vesicle development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0061086 negative regulation of histone H3-K27 methylation biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0016788 hydrolase activity, acting on ester bonds molecular_function
GO:0003677 DNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K11292 SUPT6H, SPT6; transcription elongation factor SPT6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005491 True 4998 mRNA 0.58 34 2872506 2890448
TU192197 False 516 TUCP 0.68 3 2875286 2876009

Neighbor

gene id symbol gene type direction distance location
AMCG00005495 zgc:174895,LOC105911024,LOC107580547 coding downstream 8525 2857277 ~ 2863981 (-)
AMCG00005496 nek8,LOC107672375 coding downstream 51284 2811226 ~ 2821222 (-)
AMCG00005477 traf4,LOC106581191 coding downstream 94074 2766546 ~ 2778432 (-)
AMCG00005478 tada2a,LOC107661114,LOC106612794,LOC106581187 coding downstream 178402 2683637 ~ 2694104 (-)
AMCG00005505 dusp14,LOC107672422,LOC107727911 coding downstream 220959 2650912 ~ 2651547 (-)
AMCG00005479 NA coding upstream 101969 2992417 ~ 3005846 (-)
AMCG00005480 NA coding upstream 260596 3151044 ~ 3151919 (-)
AMCG00005501 LOC108435815,LOC107756385,LOC107666187 coding upstream 459509 3349957 ~ 3365350 (-)
AMCG00005497 msi2b,LOC105028669,LOC106603292 coding upstream 676389 3566837 ~ 3568504 (-)
AMCG00005524 NA coding upstream 692953 3583401 ~ 3604355 (-)
G152473 NA non-coding downstream 427409 2415072 ~ 2445097 (-)
G152452 mate4,LOC107718064,LOC107718062,LOC107699952,LOC106604060 non-coding downstream 553834 2294833 ~ 2318672 (-)
G152424 NA non-coding downstream 696552 2167604 ~ 2175954 (-)
G152344 ywhae,LOC105005922,LOC106567579 non-coding downstream 925706 1941023 ~ 1946800 (-)
G152335 NA non-coding downstream 1119768 1745953 ~ 1752738 (-)
G152652 NA non-coding upstream 269609 3160057 ~ 3160364 (-)
G152661 NA non-coding upstream 293373 3183821 ~ 3184685 (-)
G152665 NA non-coding upstream 310737 3201185 ~ 3201687 (-)
G152736 NA non-coding upstream 416238 3306686 ~ 3308431 (-)
G152793 NA non-coding upstream 808363 3698811 ~ 3725372 (-)
AMCG00005517 NA other downstream 462259 2406525 ~ 2410247 (-)
AMCG00005532 NA other downstream 542822 2197354 ~ 2329684 (-)
AMCG00005461 eif4h other downstream 1149006 1708683 ~ 1723500 (-)
G152271 NA other downstream 1257009 1521742 ~ 1615497 (-)
G152277 NA other downstream 1364878 1505940 ~ 1507628 (-)
G152645 NA other upstream 181412 3071860 ~ 3090714 (-)
AMCG00005525 LOC106567758 other upstream 716513 3606961 ~ 3632712 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other upstream 959688 3850136 ~ 3869209 (-)
AMCG00005539 NA other upstream 1394269 4284717 ~ 4292871 (-)
G153130 NA other upstream 2410321 5300769 ~ 5302198 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018965 supt6h coding NC_007132.7 CM002905.2 26028947 ~ 26058547 (+)
grasscarp (Ctenopharyngodon idella) CI01000006_04131548_04142994 SUPT6H coding CI01000006 null 4131360 ~ 4142994 (-)