XLOC_018965 (supt6h)


Basic Information

Item Value
gene id XLOC_018965
gene name supt6h
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 26028947 ~ 26058547 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037654
GGAACCAGAATTTCGACTATATCCCCTCAGCCATTTTTTGTTGTCACTTTCAAGCTTCTCCAAAAGTGACGCTCTATTCTTCATCTCAGCACTTATTTTCACGTATTTAACCGAGCTTCATTGCGAGGAGAAGCCTTGCAAAGATGTCTGACTTCATCGAGAGCGAGGCTGAGGAGTCGGAGGAGGAGTTTGAGGAGAAGGACCTAAAGCCCAAGAAGACCCAGAGATTTATGGAAGAAGATGaagaggaagaagaagagaaTACTGAAGATCAAGACGAGCACGGAAACCTGAGAGGGCTTATTGATGATGATGACgtggaggaagaagaggaggaggaacgGGGGGAACCACCAGCAGGAGAGGACAGTGACTCTGGGGAAGAGGTCCGTCATCGACGCAGGAAACGGAGTTTTGATGACTATTTGGATGATGATGATCTGGACCTCATTGAGGAGAATTTAGGAGTAAAAGTGAAGAGGAGGAAAAAGAAGTACTCTCGTGTGAAAACAATGGATGATGagggagatgatgatgatgaaaaagaCCTGATTGCTGATGAGATCTTCACTGGGGATGGCGACGGAGAAGGAGAGGTGGAGGATGGAGAGGCCGTAGATACACTTCACCCAagagatgatgaagaggaggaagatGATGAGGAATCTGATATTGATGATTTTATTGTGGATGATGATGGACAACCCATCACTAAAAAGAAGGGAAAGAAGTTCTCTGGCTACACTGATGCTGCTTTGCAAGAAGCTCAGGAGATTTTCGGGGGTGACTTTGACTTTGCTGAGTTTGACACTGAAGCTTATGATCatgcagaagaagaagaagaggatcaGGATGATGAGTCCTGGGATCGGCCCAAGAAGCAGACCAAGAGAAGAGTCAGCCGCCGTAGCATCTTTGAGATCTATGAGCCCAGTGAGCTGGAGAGCAGCCACATGACCGATCAGGACAACGAGATCCGCTCTACAGACATGCCAGAAAGATTCCAgTTAAGGGCCATCCCTGTAAAGCCTGCTGAGGATGATGAGCTGGAGGAAGAAGCTGAATGGATTTACAGAAATGCTTTCTCCACACCGACAATCTCCATGCAGGAAAGCACAGATTACCTGGATCGTGGAACAACAACTAATTTCAGCAGAAAGGGCCCAAGTACTATTGCTAAAATCAAAGAAGCCCTGAATTTTATGAGGAACCAACACTTTGAGGTTCCCTTCATTGCGTTCTACAGGAAAGAGTATGTGGAACCAGAGCTGAACATCAATGATCTCTGGAAGGTGTGGCAGTGGGATGAGAAGTGGACCCAGCTGAAGACCAGAAAGCAGAACTTGACACGTCTTTTCCAGAGAATGCAGTCTTATCAGTTTGAGCAGATCTCGGCTGACCCTGACAAGCCTTTAGCTGACTCTACTCGTCCCCTAGACACTGCTGACATGGAGAGACTGAAAGACGTTCAGTCTATTGATGAGCTGGGTGATGTCTACAATCACTTCCTGCTCTACTATGGCAGAGACATTCCTAAGATGCAGAATGCAGCAAAGGGTGGCAAAAAGAAACTAAAGAAGATCAAGGAAGTTTCAGAGGAAGATGGGGAAGAAGCAGaagtggaggaggaagaggaagaagaggagcaAAAGGGTCCAGATCTGAAACAAGCCTCACGCAGAGATATGTACAGCATCTGCCAGAGTGCAGGCCTTGatggtCTTGCCAAGAAGTTTGGTCTGACCCCAGAACAGTTTGGTGAAAACTTGCGAGACAGTTATCAGAGGCATGAAACCGAGCAGTTTCCTGCAGAGCCTTTGGAGCTGGCCAAGGACTATGTTTGCAGccAATTTAACACCCCAGAGGCTGTCCTGGAAGGCGCTCGCTACATGGTGGCCATGCAGATTGCCCGCGAGCCTCTGGTCAGACACGTGCTCAGACAAACCTTCCAGGAGAGGGCCAAGATTAACATCAAGCCAACTAAGAAGGGCAAGAAGGATGTGGATGAGGCGCACTTTGCCTATTCTTTCAAGTACTTGAAGAACAAGCCTGTGAAAGAGCTCAGTGGAGATCAGTTCTTGAAGATGTGTCTGGCTGAGGAGGAAGGCCTTCTCGCCATAGACATCTGCATTGACCTTGTTGGAGTCAAAGGGTATGGAGATCAGACTTACTTTGATGAGATCAAGCAGTTCTACTACAGGGATGAGTTCAGTCACCAGGTGCAGGAGTGGAACAAGCAGAGAACTCTCGCCATTGAAAGATCCCTGCAGCAGTTCCTGTATCCACAGATGGCCAAAGAATTAAAGAACAAGCTTATCGCTGAAGCAAAGGACAATATTGTTAAGTCCTGCTGCAAGAAGCTGTATAATTGGTTGAAGGTGGCTCCTTATCGGCCTGATCAACAGGTGGAGGAGGACGATGACCTTATGGATGAGTCACAAGGAAAGGGCATCCGTGTGCTCGGAGTGGCCTTTGCTTCTGGCAGAGACACACCAGTGTTCTGCTCTCTCATTAATGGTGAAGGAGAGGTGGTGGATTTCCTTAGACTTCCTTATTTCCTGAAGAGGAGAAATGCATGGAGAGAAGATGAACGAGAGAAAAAGCAACAAGATGTTGAAAACCTCAAAAAATTCCTCCTCAGTAAGAAGCCACATGTTGTTGCTGTTTCTGGGGAGAATCGTGATGCGCATATGGTGATGGAGGACATCAAGCGCACCATCAGTGAGCTAGAGCAGAACTCCTCTCTGCCTGTGGTGGGAGTGGAGTTGGTGGACAATGAACTTGCTGTGCTTTATATGAACAGCAAGAAGTCTGAGGCGGATTTCAGGGATTACCCACCTCTGCTTCGGCAGGCTGTGTCTGTGGCTCGCAAAATCCAGGACCCACTAGTGGAGTTTGCCCAAGTCTGCAGTACTGATGATGACATCCTGTGTTTAAAACTGCATCCCCTGCAGGAGCATGTAGTGAAAGAGGAACTGCTGAGCGCGCTCTACTGTGAGTTCATAAACCGAGTGAATGAGGTTGGTGTGGATGTGAACCGAGCCATCGCTCACCCTTATACCCAGAGCCTGGTCCAGTACATCTGTGGTCTCGGACCAAGAAAAGGCTCACACTTGCTTAAGATTCTTAAGCAGAACAACACTAGGTTAGAGAACCGAACCCAGTTGGTCACCATGTGCCATATGGGGCCCAAAGTCTTCATTAACTGTGCTGGATTTATCAAGATTGACACAGCCTCTCTTGGAGACAGCACTGACTCCTACATTGAAGTTCTGGACGGCTCTCGAGTTCACCCTGAAACATACGAGTGGGCACGTAAAATGGCGGTGGATGCTCTAGAGTATGATGAATCTGCAGAAGATGCCAACCCAGCTGGAGCACTAGAGGAGATTCTTGAGAATCCGGAGAGGTTAAAAGATCTGGATCTGGATGCCTTCGCTGAGGAGCTGGAGAGACAGGGTTATGGTAATAAGGGAATTACACTGTATGACATCCGAGCAGAGCTCAGCTGTAGATATAAAGACCTGAGAGCTCCATACAGACCTCCCAACACAGAGGAAGTCTTTAACATGCTCACCAAGGAGACACCTGAGACTTTCTATATTGGTAAACTGATCACCTGTGTAGTAACTAACATCGCACACAGACGACCACAAGGTGAGAGTTATGACCAGGCCATCCGTAATGATGAGACTGGACTCTGGCAGTGTCCTTTTTGCCAGCAGGACAACTTCCCTGAGCTCAGTGAGGTGTGGAATCACTTTGACAGCGGCTCCTGTCCTGGTCAAGCCATCGGAGTAAGAACCAGGTTAGATAACGCCGTCATGGGCTTCATTCCAACTAAGTTTCTTAGTGACAAAGTGGTCAAGCACCCCGAGGAGAGGGTCAAGCCTGGCATGACCGTGCACTGCCGCATAATGAAGATCGACATTGAGAAGTTCAATGTAGATCTCACTTGCAGAACGTCTGATCTGAGCGATAAGAACAACGAATGGAAACTTCCCAAAGACACCTATTATGACTTTGATGCTGAGACAGATGATGTTAAACAGGAAGAGGAGCAGAAGAAGAAACAGCAGAGAACCAcTTACATCAAGCGTGTGATTGCGCATCCATCCTTCCACAACATCAACTTCAAACAAGCAGAGAAGATGATGGAGTCCATGGACCAGGGTGATGTGGTGATTCGACCGAGCAGTAAAGGGGAGAACCATTTGACGGTGACGTGGAAGGTGGCAGATGGGATCTATCAGCATGTGGACGTCCGTGAAGAGGGCAAAGAAAACGCCTTCAGCCTTGGACATACACTCTGGATTAACACTGAGGAGTTTGAGGATCTGGATGAAATCACAGCCAGATATGTCCAGCCCATGGCTGCATTCGCACGAGATCTGCTCGGCCACAAGTACTTCCATGAGTGCAATGGGGGCGACAGGAAGAAAATGGAGGAGCTTCTAGTAAGGACAAAGAAAGAAAAGCCGACGTTCATCCCTTACTACATCTCAGCATGTAGAGACCTGCCTGGCAAATTCTTGCTGGGTTACCAGCCTAGAGGGAAGCCGAGGATAGAATATGTAACCATCACTCCAGATGGCTTTAGGTATCGCTCGCAGATATTCCCTACGGTCAATGGCCTCTTCCGCTGGTTCAAAGATCACTACCAGGATCCTGTGCCAGGTGTGACTCCAGCCAGCAGCAGAACGCGAACGCCAGCATCAGTAAACGCCACACCTGCCAACATCAACATTGCAGACTTGACTCGAGCTGTGAACTCTCTTCCACGTAACATGACGTCCCAAATGTTCAACGCCATTGCAGCGGTTACAGGGCAGGGCCAAAACCCCAACACCACACCGGCTCAGTGGGCCTCCAGCCAGTATGGCTACAGCGGCGGCAGCagtgcaggaggaggaggaggcagcAGCAGTGCTTATCATGTGTTCGCAACACCCCAGCAGCCAATGGCGACACCCTTGATGACGCCCAGCTACTCTTACACCACACCAGGCCAGCAGCAGGCCATGACCACACCACAGTATCCCAGCAGCACACCACAGTCCTCACATGGACACCATCAGCATTCATCTTCCactccatcatcatcttcatcgaGAGTGAGGACGCCACAGCCCAAGGCGAGCTCTCACACCGCCGTGGATTGGGGTAAGATGGCTGAACAGTGGCTACAGGAGAAAGAAGCGGAACGACGGAAGCAAAAGACCCCCCGCATGACTCCCCGACCGTCCCCCAGCCCCATGATCGAGAGCACACCCATGTCCATAGCTGGAGATGCCACTCCATTGCTAGACGAGATGGACCGATAGAGCAGGGCTGAGTGAAGTGTCATATAGAAGTTCATCCACATCCATCCCTCACCCTCCGTCTCTCGCGCTCTCTCGCTGCTAGAAGTATTTGATTCAGAGTCATTCAGAGCTACTGATACAAAGACAAACACTTGAAACGTGCTGACGACAAACACACTTAGGAAATGGACCTACCATACAAGTTTGTCACGAGGGTTTTCtttcgttcttttttttttaaggctttTTTCGGTTTTTATTAAGTAAATTTGAAAGGAAAAGCATGAGGCGCTGCATGATCGTGCCCACAAGACCTGGTGTTCGATTCACAGTATGATCATTAGTTCAGAGCAACCCACAGAGCTTTTCGTTTTTGTATTTGGCTTTAAACGGTGAAATAAAACCGTTTTAGACAGAGCACTGTAATGATTCAGAATCAGTGTTCTGTTTTGGCTGTTACGAGGATTAAGCACTGAAGAGATTTGCGAAGCTGCTTAGCTACTAAAACAATAGATGAAGTAAGTGACGATTATTAAGAGATCCTgtaaatgttgtgtttttgtggacTGTTACAGGATCTTCCAcgttttaatttctaaacattgAGGAATGATGGTTTTAAGGTTTGCTCAGCCCATTCATTTAGATGTTCATCTTTGAAGCTCGTACATTATCAACTGATCTATTGTGCTAAAAGATATTAAGACCCTGaacggctttttttttttttgcttctctggTTTGGGGGCTGTTTGTGTGTATCTTTGCTGGCTGGACTTCCTGAAGGTGTCGCACACATGCAGTCGTCTTTCCTTCATGTGTCACTATAGACAGAAATTGTGAGATTTAGGCAAAAAGAACTTTATTAACAGGCTGTGACAATATTTTCAtgcaacaaacttttttttttctttcacccctCATCTAGTCGAGTGTGTCTGACCTGATCATGTGTTCGTTTAGCACTGAGGCTTTGCTTTGCCTTCAGGTCAGGAAATGAACTCGGTGTCTGAACCCTTCTGTTCAGTGTATTTCACTGCTGaccatttcattattttttctttgatAAAGTTGTCCCAATTAAACCTGAA

Function

symbol description
supt6h Predicted to enable histone binding activity and nucleosome binding activity. Involved in negative regulation of histone H3-K27 methylation. Acts upstream of or within embryonic heart tube development; otic vesicle development; and somitogenesis. Predicted to be located in nucleus. Predicted to be part of transcription elongation factor complex. Predicted to be active in transcriptionally active chromatin. Orthologous to human SUPT6H (SPT6 homolog, histone chaperone and transcription elongation factor).

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0034728 nucleosome organization biological_process
GO:0001756 somitogenesis biological_process
GO:0006368 transcription elongation from RNA polymerase II promoter biological_process
GO:0071599 otic vesicle development biological_process
GO:0070827 chromatin maintenance biological_process
GO:0042789 mRNA transcription by RNA polymerase II biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0050684 regulation of mRNA processing biological_process
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0061086 negative regulation of histone H3-K27 methylation biological_process
GO:0035327 transcriptionally active chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0008023 transcription elongation factor complex cellular_component
GO:0031491 nucleosome binding molecular_function
GO:0042393 histone binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko03021 Transcription machinery
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-7949 Predicted to enable histone binding activity and nucleosome binding activity. Involved in negative regulation of histone H3-K27 methylation. Acts upstream of or within embryonic heart tube development; otic vesicle development; and somitogenesis. Predicted to be located in nucleus. Predicted to be part of transcription elongation factor complex. Predicted to be active in transcriptionally active chromatin. Orthologous to human SUPT6H (SPT6 homolog, histone chaperone and transcription elongation factor).

Ensembl:

ensembl_id ENSDARG00000006524

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037654 True 6394 mRNA 0.48 37 26028947 26058547

Neighbor

gene id symbol gene type direction distance location
XLOC_018964 caln2 coding upstream 14470 25932107 ~ 26014477 (+)
XLOC_018963 nf2b coding upstream 209240 25801345 ~ 25819707 (+)
XLOC_018962 zgc:136892 coding upstream 232979 25793970 ~ 25795968 (+)
XLOC_018961 cldnd coding upstream 250746 25777425 ~ 25778201 (+)
XLOC_018960 cldnb coding upstream 262107 25765734 ~ 25766840 (+)
XLOC_018966 rpl23a coding downstream 13327 26071874 ~ 26074640 (+)
XLOC_018967 BX890629.2 coding downstream 121352 26179899 ~ 26180015 (+)
XLOC_018968 tmsb coding downstream 330844 26389391 ~ 26393520 (+)
XLOC_018969 NA coding downstream 423970 26482517 ~ 26489764 (+)
XLOC_018970 NA coding downstream 431760 26490307 ~ 26501378 (+)
XLOC_018957 NA non-coding upstream 364287 25660237 ~ 25664660 (+)
XLOC_018954 NA non-coding upstream 442666 25585726 ~ 25586281 (+)
XLOC_018952 NA non-coding upstream 592703 25434689 ~ 25436244 (+)
XLOC_018951 BX510938.3 non-coding upstream 651668 25376955 ~ 25377279 (+)
XLOC_018949 BX510938.4 non-coding upstream 662813 25365879 ~ 25366134 (+)
XLOC_018980 NA non-coding downstream 760515 26819062 ~ 26821115 (+)
XLOC_018986 BX530031.1 non-coding downstream 1276578 27335125 ~ 27335261 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_04131548_04142994 SUPT6H coding CI01000006 null 4131360 ~ 4142994 (-)
bowfin (Amia calva) AMCG00005491 supt6h,LOC107603297 misc CM030142.1 CM030142.1 2872506 ~ 2890448 (-)