XLOC_018966 (rpl23a)


Basic Information

Item Value
gene id XLOC_018966
gene name rpl23a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 26071874 ~ 26074640 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037655
AACCCTGCAATATACTGAAGGAAACCCCTCTCGTTCTTCCTTTCCCAACATGGCCCCGAAGGCGAAGAAGGAAGCTGTCCCGGCAAAGACTGAGGCCAAATCTAAGGCCCTGAAAGCCAAGAAGGCTGTGCTGAAGGGAGTCCACagccagaagaagaagaagatcaggACTACCCCGACCTTCCACCGGCCCAAAACCCTGCGTCTGAGGAGGCAGCCCAAGTACCCTAGGAAAAGCGCTCCACGCAGAAACAAGTTGGACCATTATGCCATCATCAAGTTCCCCTTGACCACTGAGTCGGCCATGAAGAAGATCGAGGACAACAAcactctggtgtttattgttgaCGTAAAGGCAAACAAGCATCAGATTAAACATGCCGTCAAGAAACTGTACGACATCGATGTGGCCAAAGTCAACACACTGATCAGGCCCGATGGCGAAAAGAAGGCATACGTTCGTCTCGCACCAGATTATGATGCATTGGATGTTGCCAACAAGATCGGCATCATCTAAACTGCTTTTGGTCAGATGTACAGaagaataaatgtttgtaaaacaa
>TCONS_00037656
CTTTCCCAACATGGCCCCGAAGGCGAAGAAGGAAGCTGTCCCGGCAAAGACTGAGGCCAAATCTAAGGCCCTGAAAGCCAAGAAGGCTGTGCTGAAGGGAGTCCACagccagaagaagaagaagatcaggACTACCCCGACCTTCCACCGGCCCAAAACCCTGCGTCTGAGGAGGCAGCCCAAGTACCCTAGGAAAAGCGCTCCACGCAGAAACAAGTTGGACCATTATGCCATCATCAAGTTCCCCTTGACCACTGAGTCGGCCATGAAGAAGATCGAGGACAACAAcactctggtgtttattgttgaCGTAAAGGCAAACAAGCATCAGATTAAACATGCCGTCAAGAAACTGTACGACATCGATGTGGCCAAAGTCAACACACTGATCAGGTATAACTATTTATTAATCTAGGCATTTTTAAACAGTGGTTTTCAACTTTGCCGTCCAGTGTGCACATGgaataaatatgttattatatataattatatgctTGCTCACTTATTCAAACTTGTAAAAGATTTCGTTTTGTCtctttttattgttaaatgtttAAGTGATTGGTGTAAAATACAGAACTGAAAAGGGTTGAGAAACCAGCAGTTGTGTCAATTACAGAATTATTACTGGAACATTAACTTAAACTTTTATGTAGAACGTATTAATTAAGATTAAAAAGTACAAGTACTCAATTAAAGTAGTTGCTTTCTACCATATCTACACTTAAGGCAAACATTtaacttcatttttaaaaaaaaaacctgacttaTGAAGTTTTTCTTTAAGGCAAATGTTAAGAATCACTGTTTTAAGGCGATGCTTTTATGATGTTGAGATGTGCTAAAATGATTAGAGGAGAAACCCTGCT
>TCONS_00037657
GGCGAAGAAGGAAGCTGTCCCGGCAAAGACTGAGGCCAAATCTAAGGCCCTGAAAGCCAAGAAGGCTGTGCTGAAGGGAGTCCACagccagaagaagaagaagatcaggACTACCCCGACCTTCCACCGGCCCAAAACCCTGCGTCTGAGGAGGCAGCCCAAGTACCCTAGGAAAAGCGCTCCACGCAGAAACAAGTTGGACCATTATGCCATCATCAAGTTCCCCTTGACCACTGAGTCGGCCATGAAGAAGATCGAGGACAACAAcactctggtgtttattgttgaCGTAAAGGCAAACAAGCATCAGATTAAACATGCCGTCAAGAAACTGTACGACATCGATGTGGCCAAAGTCAACACACTGATCAGGCCCGATGGCGAAAAGAAGGCATACGTTCGTCTCGCACCAGATTATGATGCATTGGATGTTGCCAACAAGGTAAATAATTTATGAACTAGTAAATTAATTTCATGTCACTATGTTGGACGCTGAGGAAGTTTATTTTTGAAGCTCTGCATATGATGTAAATTAAGTTTCTGCCTGAATGATTGTGATGCATTCAAAGGAACCACTGATGCTctgttttcttgcctttgtgaAGTGTTTGCTGTGATCAGTACTGATTATCATCTGTTCTCTATTACAGATCGGCATCATCTAAACTGCTTTTGGTCAGATGTACAGaagaataaatgtttgtaaaac
>TCONS_00037658
ATGcattttatgttataaaaataaagtttgtgcaaattatatacagttttattttcattcaaatCTGTCCCGGCAAAGACTGAGGCCAAATCTAAGGCCCTGAAAGCCAAGAAGGCTGTGCTGAAGGGAGTCCACagccagaagaagaagaagatcaggACTACCCCGACCTTCCACCGGCCCAAAACCCTGCGTCTGAGGAGGCAGCCCAAGTACCCTAGGAAAAGCGCTCCACGCAGAAACAAGTTGGACCATTATGCCATCATCAAGTTCCCCTTGACCACTGAGTCGGCCATGAAGAAGATCGAGGACAACAAcactctggtgtttattgttgaCGTAAAGGCAAACAAGCATCAGATTAAACATGCCGTCAAGAAACTGTACGACATCGATGTGGCCAAAGTCAACACACTGATCAGGCCCGATGGCGAAAAGAAGGCATACGTTCGTCTCGCACCAGATTATGATGCATTGGATGTTGCCAACAAGATCGGCATCATCTAAACTGCTTTTGGTCAGATGTACAGaagaataaatgtttgtaaaac
>TCONS_00037659
GCTGTCCCGGCAAAGACTGAGGCCAAATCTAAGGCCCTGAAAGCCAAGAAGGCTGTGCTGAAGGGAGTCCACagccagaagaagaagaagatcaggACTACCCCGACCTTCCACCGGCCCAAAACCCTGCGTCTGAGGAGGCAGCCCAAGTACCCTAGGAAAAGCGCTCCACGCAGAAACAAGTTGGACCATTATGCCATCATCAAGTTCCCCTTGACCACTGAGTCGGCCATGAAGAAGATCGAGGACAACAAcactctggtgtttattgttgaCGTAAAGGCAAACAAGCATCAGATTAAACATGCCGTCAAGAAACTGTACGACATCGATGTGGCCAAAGTCAACACACTGATCAGGCCCGATGGCGAAAAGAAGGCATACGTTCGTCTCGCACCAGATTATGATGCATTGGATGTTGCCAACAAGATCGGCATCATCTAAACTGCTTTTGGTCAGATGTACAGaagaataaatgtttgt
>TCONS_00037660
CTGCATATGATGTAAATTAAGTTTCTGCCTGAATGATTGTGATGCATTCAAAGGAACCACTGATGCTc

Function

symbol description
rpl23a Predicted to be a structural constituent of ribosome. Acts upstream of or within pancreas development and regulation of cell cycle. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in digestive system; endodermal cell; and epithelial cell of pancreas. Orthologous to human RPL23A (ribosomal protein L23a).

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0031016 pancreas development biological_process
GO:0006412 translation biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-030131-7479 Predicted to be a structural constituent of ribosome. Acts upstream of or within pancreas development and regulation of cell cycle. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in digestive system; endodermal cell; and epithelial cell of pancreas. Orthologous to human RPL23A (ribosomal protein L23a).

Ensembl:

ensembl_id ENSDARG00000006316 ENSDARG00000082891

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037655 False 563 mRNA 0.49 5 26071874 26074640
TCONS_00037656 False 869 lncRNA 0.39 3 26071913 26074166
TCONS_00037657 False 709 mRNA 0.45 4 26071934 26074638
TCONS_00037658 False 551 processed_transcript 0.45 5 26071961 26074638
TCONS_00037659 False 483 mRNA 0.49 4 26073104 26074633
TCONS_00037660 True 68 snoRNA 0.38 1 26074446 26074513

Neighbor

gene id symbol gene type direction distance location
XLOC_018965 supt6h coding upstream 13327 26028947 ~ 26058547 (+)
XLOC_018964 caln2 coding upstream 57397 25932107 ~ 26014477 (+)
XLOC_018963 nf2b coding upstream 252167 25801345 ~ 25819707 (+)
XLOC_018962 zgc:136892 coding upstream 275906 25793970 ~ 25795968 (+)
XLOC_018961 cldnd coding upstream 293673 25777425 ~ 25778201 (+)
XLOC_018967 BX890629.2 coding downstream 105259 26179899 ~ 26180015 (+)
XLOC_018968 tmsb coding downstream 314751 26389391 ~ 26393520 (+)
XLOC_018969 NA coding downstream 407877 26482517 ~ 26489764 (+)
XLOC_018970 NA coding downstream 415667 26490307 ~ 26501378 (+)
XLOC_018971 adssl coding downstream 447931 26522571 ~ 26531535 (+)
XLOC_018957 NA non-coding upstream 407214 25660237 ~ 25664660 (+)
XLOC_018954 NA non-coding upstream 485593 25585726 ~ 25586281 (+)
XLOC_018952 NA non-coding upstream 635630 25434689 ~ 25436244 (+)
XLOC_018951 BX510938.3 non-coding upstream 694595 25376955 ~ 25377279 (+)
XLOC_018949 BX510938.4 non-coding upstream 705740 25365879 ~ 25366134 (+)
XLOC_018980 NA non-coding downstream 744422 26819062 ~ 26821115 (+)
XLOC_018986 BX530031.1 non-coding downstream 1260485 27335125 ~ 27335261 (+)

Expression


Co-expression Network