XLOC_018968 (tmsb)


Basic Information

Item Value
gene id XLOC_018968
gene name tmsb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 26389391 ~ 26393520 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037662
ATTCACACGCGGCCAGAACCTGCTGCTCCATCCACACAAGCACACAGCCTGACACTTTCTCTTTCAGCACTCCAGCCCATTCACTGCTTTACGCTCAAAAAAACATGGCCGACAAACCCAACATGACTGAAATTACATCCTTTGATAAAACTAAACTCAGAAAGACAGAGACCCAAGAAAAGAACCCTTTGCCAACCAAAGAAACTATTGAACAGGAGAGACAAGGAGAGTCCACACCGTGAATGACGTCTGTAACACAGCAGAAAGTGAAGACCAGAGACTTCAGACGAACTCAAGCACTCACTAATGTGTCTTTTTTTATAACTTAGATTGTCCGTTTAAGAACTAAATCAAATGTGAGAATGTATTTCACCCTGTGAGTTCAGAAAACCAAATAAAATGCACCTCATTTTTGACACAATAATAagttatttttctgtattttctcCAGATTTGTTTGGATGCATTTAGTTGCTTGAAAAAATGCAGTAAACTACTTTTTGGTGCTACACACCAGCAAACTTATGATTTTAGTAATGTGATTACaatattataatgatatataatttaatgaactaacttTTCCTTTAGGTCTAGTACATATTAGCTACTAGTGCTTTTTCTTTATGTATTATTAGATTATTGATTATTGAATATTTGAACCTTTTAAAGGATAtacttgcatttatttatttgattaaatataaactaaatttTATTTATCACATACAGTGTTGGGGTAAGTTACTCTTGAAACTAAcgcattacaatattaattactCCCCaacgttacttagttactttttatggtataAGTAATGTCTTACATTACttgtgttactttttattacatGGCTGCGACTTactctctttcagaacttgtttttATAGAAGAGTTTTGTAATTATCAACGCACTGTATAACCCACACCTTTATTCATCTTAAATTAACCCCACATCTTTTCAcatattttaggataatgttatctaagaacttcctgaccccagagctctacatgccatatatacagattactgaaagtttaaagcaatgtgtttgctatgTTTGTCCTATTTGTCtcaagtaaaatcactgtccattaagacaa
>TCONS_00037663
ATGGCCGACAAACCCAACATGACTGAAATTACATCCTTTGATAAAACTAAACTCAGAAAGACAGAGACCCAAGAAAAGAACCCTTTGCCAACCAAAGAAACTATTGAACAGGAGAGACAAGGAGAGTCCACACCGTGAATGACGTCTGTAACACAGCAGAAAGTGAAGACCAGAGACTTCAGACGAACTCAAGCACTCACTAATGTGTCTTTTTTTATAACTTAGATTGTCCGTTTAAGAACTAAATCAAATGTGAGAATGTATTTCACCCTGTGAGTTCAGAAAACCAAATAAAATGCACCTCATTTTTGACACAATAATAagttatttttctgtattttctcCAGATTTGTTTGGATGCATTTAGTTGCTTGAAAAAATGCAGTAAACTACTTTTTGGTGCTACACACCAGCAAACTTATGATTTTAGTAATGTGATTACaatattataatgatatataatttaatgaactaacttTTCCTTTAGGTCTAGTACATATTAGCTACTAGTGCTTTTTCTTTATGTATTATTAGATTATTGATTATTGAATATTTGAACCTTTTAAAGGATAtacttgcatttatttatttgattaaatataaactaaatttTATTTATCACATACAGTGTTGGGGTAAGTTACTCTTGAAACTAAcgcattacaatattaattactCCCCaacgttacttagttactttttatggtataAGTAATGTCTTACATTACttgtgttactttttattacatGGCTGCGACTTactctctttcagaacttgtttttATAGAAGAGTTTTGTAATTATCAACGCACTGTATAACCCACACCTTTATTCATCTTAAATTAACCCCACATCTTTTCAcatattttaggataatgttatctaagaacttcctgaccccagagctctacatgccatatatacagattactgaaagtttaaagcaatgtgtttgctatgTTTGTCCTATTTGTCtcaagtaaaatcactgtccattaagacaatccccttttccttttcgTAGATGCTTTCAATATtatgaacacattctctcattgactgcgtgattcatcgtgactactttaattttaattcagctaattaattaaactaagaagtaactcacattacatttttaaaaggtaactcaaatattattacttaacttttaaaagtaatgccttactttactcgttacttagaaaagtaaattattatgtaaatattCATTGGTAACTAGTTGTTATTCACTAGATATTACAATATTGATACATTTGTACCTATTAAACTGATACATGTATTCATTGATTGGCACCTTTAGACATTCATTAATTCCTTTACTTAAATACTtatttgattattcatttattagatGCTATGGTATCTTTTTGAATTAGTTCCATTTGCACTATACTAGTAAAGACACTATTAGCATTTATTAGTTACCACTTATTTATTAGACACTAAAATGCATATACAACATATTTGAAAATTTACcattaacatatttttattttacaattagaTCTTTATTAAACTATCCCGCGACCATCCTGAGTAATCGTAATATATTGATGAGTAATAAGCATGCTGTGAATATATCGTCAccctagaattataaggttctatctgacatttttgtcaaaattgagttattgacatattcttaataaatgataaataatttacattatgggatgctttttttataagttgtttacattaagactttttatttaaaaaaaacaaatgttacacacatactgtctgCATTCAGAACACAAATAGAAC

Function

symbol description
tmsb Predicted to enable actin monomer binding activity. Acts upstream of or within induction of bacterial agglutination and regulation of inflammatory response to wounding. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Is expressed in several structures, including gill; integument; liver; pleuroperitoneal region; and thymus. Orthologous to human TMSB10 (thymosin beta 10).

GO:

id name namespace
GO:0042989 sequestering of actin monomers biological_process
GO:0007015 actin filament organization biological_process
GO:0106014 regulation of inflammatory response to wounding biological_process
GO:0043152 induction of bacterial agglutination biological_process
GO:0030334 regulation of cell migration biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function
GO:0003785 actin monomer binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050307-5 Predicted to enable actin monomer binding activity. Acts upstream of or within induction of bacterial agglutination and regulation of inflammatory response to wounding. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Is expressed in several structures, including gill; integument; liver; pleuroperitoneal region; and thymus. Orthologous to human TMSB10 (thymosin beta 10).

Ensembl:

ensembl_id ENSDARG00000054911

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037662 False 1108 mRNA 0.33 3 26389391 26392733
TCONS_00037663 True 1791 mRNA 0.29 2 26390549 26393520

Neighbor

gene id symbol gene type direction distance location
XLOC_018967 BX890629.2 coding upstream 209376 26179899 ~ 26180015 (+)
XLOC_018966 rpl23a coding upstream 314751 26071874 ~ 26074640 (+)
XLOC_018965 supt6h coding upstream 330844 26028947 ~ 26058547 (+)
XLOC_018964 caln2 coding upstream 374914 25932107 ~ 26014477 (+)
XLOC_018963 nf2b coding upstream 569684 25801345 ~ 25819707 (+)
XLOC_018969 NA coding downstream 88997 26482517 ~ 26489764 (+)
XLOC_018970 NA coding downstream 96787 26490307 ~ 26501378 (+)
XLOC_018971 adssl coding downstream 129051 26522571 ~ 26531535 (+)
XLOC_018972 vegfbb coding downstream 139269 26532789 ~ 26535721 (+)
XLOC_018973 stx5al coding downstream 143430 26536950 ~ 26554325 (+)
XLOC_018957 NA non-coding upstream 724731 25660237 ~ 25664660 (+)
XLOC_018954 NA non-coding upstream 803110 25585726 ~ 25586281 (+)
XLOC_018952 NA non-coding upstream 953147 25434689 ~ 25436244 (+)
XLOC_018951 BX510938.3 non-coding upstream 1012112 25376955 ~ 25377279 (+)
XLOC_018980 NA non-coding downstream 425542 26819062 ~ 26821115 (+)
XLOC_018986 BX530031.1 non-coding downstream 941605 27335125 ~ 27335261 (+)
XLOC_018995 NA non-coding downstream 1221468 27614988 ~ 27626799 (+)

Expression


Co-expression Network