RNA id: TCONS_00037663


Basic Information

Item Value
RNA id TCONS_00037663
length 1791
RNA type mRNA
GC content 0.29
exon number 2
gene id XLOC_018968
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 26389391 ~ 26393520 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCCGACAAACCCAACATGACTGAAATTACATCCTTTGATAAAACTAAACTCAGAAAGACAGAGACCCAAGAAAAGAACCCTTTGCCAACCAAAGAAACTATTGAACAGGAGAGACAAGGAGAGTCCACACCGTGAATGACGTCTGTAACACAGCAGAAAGTGAAGACCAGAGACTTCAGACGAACTCAAGCACTCACTAATGTGTCTTTTTTTATAACTTAGATTGTCCGTTTAAGAACTAAATCAAATGTGAGAATGTATTTCACCCTGTGAGTTCAGAAAACCAAATAAAATGCACCTCATTTTTGACACAATAATAagttatttttctgtattttctcCAGATTTGTTTGGATGCATTTAGTTGCTTGAAAAAATGCAGTAAACTACTTTTTGGTGCTACACACCAGCAAACTTATGATTTTAGTAATGTGATTACaatattataatgatatataatttaatgaactaacttTTCCTTTAGGTCTAGTACATATTAGCTACTAGTGCTTTTTCTTTATGTATTATTAGATTATTGATTATTGAATATTTGAACCTTTTAAAGGATAtacttgcatttatttatttgattaaatataaactaaatttTATTTATCACATACAGTGTTGGGGTAAGTTACTCTTGAAACTAAcgcattacaatattaattactCCCCaacgttacttagttactttttatggtataAGTAATGTCTTACATTACttgtgttactttttattacatGGCTGCGACTTactctctttcagaacttgtttttATAGAAGAGTTTTGTAATTATCAACGCACTGTATAACCCACACCTTTATTCATCTTAAATTAACCCCACATCTTTTCAcatattttaggataatgttatctaagaacttcctgaccccagagctctacatgccatatatacagattactgaaagtttaaagcaatgtgtttgctatgTTTGTCCTATTTGTCtcaagtaaaatcactgtccattaagacaatccccttttccttttcgTAGATGCTTTCAATATtatgaacacattctctcattgactgcgtgattcatcgtgactactttaattttaattcagctaattaattaaactaagaagtaactcacattacatttttaaaaggtaactcaaatattattacttaacttttaaaagtaatgccttactttactcgttacttagaaaagtaaattattatgtaaatattCATTGGTAACTAGTTGTTATTCACTAGATATTACAATATTGATACATTTGTACCTATTAAACTGATACATGTATTCATTGATTGGCACCTTTAGACATTCATTAATTCCTTTACTTAAATACTtatttgattattcatttattagatGCTATGGTATCTTTTTGAATTAGTTCCATTTGCACTATACTAGTAAAGACACTATTAGCATTTATTAGTTACCACTTATTTATTAGACACTAAAATGCATATACAACATATTTGAAAATTTACcattaacatatttttattttacaattagaTCTTTATTAAACTATCCCGCGACCATCCTGAGTAATCGTAATATATTGATGAGTAATAAGCATGCTGTGAATATATCGTCAccctagaattataaggttctatctgacatttttgtcaaaattgagttattgacatattcttaataaatgataaataatttacattatgggatgctttttttataagttgtttacattaagactttttatttaaaaaaaacaaatgttacacacatactgtctgCATTCAGAACACAAATAGAAC

Function

GO:

id name namespace
GO:0042989 sequestering of actin monomers biological_process
GO:0007015 actin filament organization biological_process
GO:0106014 regulation of inflammatory response to wounding biological_process
GO:0043152 induction of bacterial agglutination biological_process
GO:0030334 regulation of cell migration biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function
GO:0003785 actin monomer binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050307-5 Predicted to enable actin monomer binding activity. Acts upstream of or within induction of bacterial agglutination and regulation of inflammatory response to wounding. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Is expressed in several structures, including gill; integument; liver; pleuroperitoneal region; and thymus. Orthologous to human TMSB10 (thymosin beta 10).

Ensembl:

ensembl_id ENSDART00000185643

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00037656 lncRNA upstream 316383 26071913 ~ 26074166 (+) False XLOC_018966
TCONS_00037645 lncRNA upstream 698252 25688395 ~ 25692297 (+) True XLOC_018959
TCONS_00037642 lncRNA upstream 725889 25660237 ~ 25664660 (+) True XLOC_018957
TCONS_00039415 lncRNA upstream 804268 25585726 ~ 25586281 (+) True XLOC_018954
TCONS_00039414 lncRNA upstream 954305 25434689 ~ 25436244 (+) True XLOC_018952
TCONS_00037664 lncRNA downstream 88997 26482517 ~ 26489764 (+) True XLOC_018969
TCONS_00039416 lncRNA downstream 96787 26490307 ~ 26501378 (+) True XLOC_018970
TCONS_00037678 lncRNA downstream 339813 26733333 ~ 26757389 (+) False XLOC_018979
TCONS_00039417 lncRNA downstream 425542 26819062 ~ 26821115 (+) True XLOC_018980
TCONS_00037690 lncRNA downstream 947193 27340713 ~ 27341955 (+) True XLOC_018987
TCONS_00037655 mRNA upstream 315909 26071874 ~ 26074640 (+) False XLOC_018966
TCONS_00037657 mRNA upstream 315911 26071934 ~ 26074638 (+) False XLOC_018966
TCONS_00037659 mRNA upstream 315916 26073104 ~ 26074633 (+) False XLOC_018966
TCONS_00037654 mRNA upstream 332002 26028947 ~ 26058547 (+) True XLOC_018965
TCONS_00037652 mRNA upstream 376072 25932107 ~ 26014477 (+) False XLOC_018964
TCONS_00037665 mRNA downstream 129051 26522571 ~ 26531535 (+) False XLOC_018971
TCONS_00037667 mRNA downstream 139269 26532789 ~ 26535721 (+) False XLOC_018972
TCONS_00037668 mRNA downstream 141514 26535034 ~ 26535572 (+) True XLOC_018972
TCONS_00037669 mRNA downstream 143430 26536950 ~ 26554325 (+) False XLOC_018973
TCONS_00037670 mRNA downstream 145637 26539157 ~ 26553394 (+) True XLOC_018973
TCONS_00037661 other upstream 210534 26179899 ~ 26180015 (+) True XLOC_018967
TCONS_00037658 other upstream 315911 26071961 ~ 26074638 (+) False XLOC_018966
TCONS_00037660 other upstream 316036 26074446 ~ 26074513 (+) True XLOC_018966
TCONS_00037649 other upstream 582110 25801345 ~ 25808439 (+) False XLOC_018963
TCONS_00037636 other upstream 1013270 25376955 ~ 25377279 (+) True XLOC_018951
TCONS_00037666 other downstream 129575 26523095 ~ 26526612 (+) True XLOC_018971
TCONS_00037687 other downstream 941605 27335125 ~ 27335261 (+) True XLOC_018986
TCONS_00037704 other downstream 2098122 28491642 ~ 28491759 (+) True XLOC_018999
TCONS_00037718 other downstream 2399037 28792557 ~ 28794078 (+) True XLOC_019004
TCONS_00037722 other downstream 2712478 29105998 ~ 29106120 (+) True XLOC_019009

Expression Profile

//