G154150


Basic Information

Item Value
gene id G154150
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9095671 ~ 9108363 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU194159
CAGTGCTTTGAATGCCTCTTTAGACACTTTCACTCACTTTCATGATCATCTGAAcgagtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgctagtcCTGCGGGAGTGGTCAGTGGCTTGCTCGGCCGCCTGTGAGTGTCAGTTTGTGCTCACTCACTTCCTTCCCCTTTCACACAAAGCGATTATCATTAGCAGCAAAAGATTATATTGCTTTCTCGAATGAGGGGAGAGCCAGACGACTCTAATGGAGGGGATTAACAGGCAGAGGATTCCTTATTAAGCTGGGATGGGAGAGAGTCCACACTGAGGTGCAGTAGGGAGCGGGTCGGTGGGAGTCCACGTCCACAGCCTGCCTGGGGAGCCCTGCAGAGTCGGCGCCTGCTTTCACAGCAATGTCTCGCACTGCAGCCCACATCCACTGCCTACTGGCTGTCCTCCTCACCTGCACCCTGCCAGttcCTGCCGAGGGACCAAGCGCACCAGCTCAACCAGAGCTGGTCTACGCAGCAGTCTCCATTCGGCACTCCAGCCACCCATTGACAGACCAGCCTGTTAGCCAATCAGAACCTACAGTCTACTCTTCTGTGCGCTTCAAAAAGTCAAGCCAGGGAAGCTGTGTTGAACTCGGCTGAGCAGCAGCTCTTCCACCCAGACTCTCACTAGCCCAGCCTCGGGCAAATCAAAGGAGAGTCACAAGAAACAGACTTGAGACCCAAGCAATATAAAACATGGACTGTGTGGAAATCCAGCTCTTCAAGGGGAAGATGACACTTCAGACTAAATGAAAGTACAGGAAGATGGTAGCTCACACCACCAATTCACCAGCATGCCCTGCAGCAGTGAAGAACAGGGACTACCAGTAGGTCTGAAAATGTCCATTTTCAATCTCATGTTCTGAACCACTTAAATTGGAAGTGGGGAAAGTACTTTTACACAACTGCAATTAAAACCAAGGGGTATCTGAATGTTAAACCACACCAAGTTTGATTTAAGCATGGCAAGTAAACACCCTCTGCACTTGAGGATACCACAAAGCACATTAAACCACTGACCAACATGTGATtatcattttcactttcattgcAATTGTGTCACTttggataagggagtctgctcTAGTGATTGAGCTtcctttttaaacaattaaaaatgcatacattttctcCAAACTAATCTTGGACTGTTCTCAAATGAACAAGTTGCAAAAACTGCATCCACCCATCAGACAGTTTGGATTTTAACAATACTCTGAACACTTGTGTGGGTGCAGATATCCTTCAAGCATTAGCTTCAaggcaggaaaacaaaccacacaatcaagtacaaaaaaaaaaagtttattaacAAAGTGCCAACAGTGTGCTGCAGCCTCTAGTCCACTCAGGCTCAGGGTTGGCTCATCTTCAGGGCACCCAACTCTGCAGGGACAATACAGGTATACATTAGACACAGCTCTCACCGTGGGGACAGTCGGCGGCTCAGACCACCGTGCGTTCAGAAAACCGAAAAGTCAC
>TU194160
CAGTTTCATTTTGAGGCCATTCATTCAGCAAAAGATTATATTGCTTTCTCGAATGAGGGGAGAGCCAGACGACTCTAATGGAGGGGATTAACAGGCAGAGGATTCCTTATTAAGCTGGGATGGGAGAGAGTCCACACTGAGGTGCAGTAGGGAGCGGGTCGGTGGGAGTCCACGTCCACAGCCTGCCTGGGGAGCCCTGCAGAGTCGGCGCCTGCTTTCACAGCAATGTCTCGCACTGCAGCCCACATCCACTGCCTACTGGCTGTCCTCCTCACCTGCACCCTGCCAGttcCTGCCGAGGGACCAAGCGCACCAGCTCAACCAGAGCTGGTCTACGCAGCAGTCTCCATTCGGCACTCCAGCCACCCATTGACAGACCAGCCTGTTAGCCAATCAGAACCTACAGTCTACTCTTCTGTGCGCTTCAAAAAGTCAAGCCAGGGAAGCTGTGTTGAACTCGGCTGAGCAGCAGCTCTTCCACCCAGACTCTCACTAGCCCAGCCTCGGGCAAATCAAAGGAGAGTCACAAGAAACAGACTTGAGACCCAAGCAATATAAAACATGGACTGTGTGGAAATCCAGCTCTTCAAGGGGAAGATGACACTTCAGACTAAATGAAAGTACAGGAAGATGGTAGCTCACACCACCAATTCACCAGCATGCCCTGCAGCAGTGAAGAACAGGGACTACCAGTAGGTCTGAAAATGTCCATTTTCAATCTCATGTTCTGAACCACTTAAATTGGAAGTGGGGAAAGTACTTTTACACAACTGCAATTAAAACCAAGGGGTATCTGAATGTTAAACCACACCAAGTTTGATTTAAGCATGGCAAGTAAACACCCTCTGCACTTGAGGATACCACAAAGCACATTAAACCACTGACCAACATGTGATtatcattttcactttcattgcAATTGTGTCACTttggataagggagtctgctcTAGTGATTGAGCTtcctttttaaacaattaaaaatgcatacattttctcCAAACTAATCTTGGACTGTTCTCAAATGAACAAGTTGCAAAAACTGCATCCACCCATCAGACAGTTTGGATTTTAACAATACTCTGAACACTTGTGTGGGTGCAGATATCCTTCAAGCATTAGCTTCAaggcaggaaaacaaaccacacaatcaagtacaaaaaaaaaaagtttattaacAAAGTGCCAACAGTGTGCTGCAGCCTCTAGTCCACTCAGGCTCAGGGTTGGCTCATCTTCAGGGCACCCAACTCTGCAGGGACAATACAGGTATACATTAGACACAGCTCTCACCGTGGGGACAGTCGGCGGCTCAGAGCTGTGTCTAATGTATACCTGTATTGTCCCTGCAGAGTTGAGCAGCCAGAGTGTGGCCTGATGGGCTGGGAGGCTGTGTGGAGGTGAGTCCTAATCATGTGGAAAACTAGACCCTATTGTGAACAACCTTGGTGAGTTATTTGCATTAAAGCAGGTTTCTTTAAGATCCCTCTGTACACATTCCATTAACTTTATGGGTGTTTGCAGTCTTTATAAACTGAACTCCAAAAGCTAGTGAAAAGCATTTCTATTGGCTAAGCACTGCGTTTTTGGCTGTAGTGCGATGCCGTATGTCCCCAGGACTATGGGCAATATTGCAAAGCCATGTGCATGGTGTAGGGTTGGGTGATATGACCTAAAATCTTTTAAGGTTTGGGGACAATACACAATGTATAGATTTCTTGTTCACCAAACAAGCTGCAAAATAAGACCAAATACCTAATTCAAAAGTTTTctttaatcaataaatatgcaaaatgtacCACTTGCCAGCCAGTCATAAATGTACATTATCCTTTTACCTGACTTTAAAggagtacatttaaataaaccttcTAGTATTGCtgtaaaaatgcacaaaataataaatgcatgtacTTGCcgtcaaactacattttgaagAAAGTTTGGCATACAAAAGCCTGAAAAATCGACCATGAAACCTGCAGtaattgtaaaacaaagtatagttttgttttatggtcACATTACACAATGGTAATCGCACAACCCATGCACTGTAAAATAGTGTAGGTTCAGATTCACCACATCTGGGTTTTGTGGTGCATTTGATTTGTTCTTGCTAAACCAGTAAATTACTTCACTATGATGGTATGGTTTAGATTTGAAATCTGCTTATTGGTACAACACTGTATtatagttaaaatgtatttgcttgtttttagtGTACAATTCAAACATTAACCGTTTTAACTTCATTATCCGCTTTTTAAAATTTAAGCGGAACATTCAACAACATAACTCcacaaactaataattaaaataacactgcACTTCATAAGCAGTTGCATCTCCTGATTTAACCATCTCAACTAATTTACAAACAATGCAAATTAGGTGGCAACACCACCGAGACGCATTTGCTccaattttaatttcttctccCACCCAAGCTTTATAAATTAAGGCGATTGGCCACACAAATGATTGACAAGAatttcctgcaaagtgattggctgTGTAATTTGTTACTCCTCCCATATTCCATGGTCTTGGGAACTGCAGCTATAAATGTCATAAATCGGAGTGTGgagtttgtcatttttaaatattttgcattttaaactacaTCGCCCAGCCCTAGCATGGAATTGTTGGGACCCTGCTGCTGTGCTCTGCTTTCCTGGGGTCTGCCTCTTCCTCTCGCATGTTTGCTGCTGTATGTCCCAGTGATGAAAACCTTGAGTAGGAAGTGCCGTC
>TU194161
GCTTCAAGTGCTTGGCAGGAGAAACTACCTGAAGGTGCCAGAGGGGGGCAGTGTGTCCCTGTCCTGCAGGGTGGCGCACTGTGGAGAGGGCAGGTGgacaggggggtgggggaggaatGATTTAGGTGACTTTAGTCCCCTGAACCTGACTGACACAGTGCAGCTCACTGAGGTCCCTACGGCAGCCAATGAGACTGAGCTGAGGTTGACCTTTCTCAGGCTCAACCAATCAGACTCTGGAGGCTACCAGTGCAGGGTTAAAGGGACGGGGACAGGGACCTTCACTCTGGGACATCTGACCAATCTGACAGTCACAGCAATCACAGttcCTGCCGAGGGACCAAGCGCACCAGCTCAACCAGAGCTGGTCTACGCAGCAGTCTCCATTCGGCACTCCAGCCACCCATTGACAGACCAGCCTGTTAGCCAATCAGAACCTACAGTCTACTCTTCTGTGCGCTTCAAAAAGTCAAGCCAGGGAAGCTGTGTTGAACTCGGCTGAGCAGCAGCTCTTCCACCCAGACTCTCACTAGCCCAGCCTCGGGCAAATCAAAGGAGAGTCACAAGAAACAGACTTGAGACCCAAGCAATATAAAACATGGACTGTGTGGAAATCCAGCTCTTCAAGGGGAAGATGACACTTCAGACTAAATGAAAGTACAGGAAGATGGTAGCTCACACCACCAATTCACCAGCATGCCCTGCAGCAGTGAAGAACAGGGACTACCAGTAGGTCTGAAAATGTCCATTTTCAATCTCATGTTCTGAACCACTTAAATTGGAAGTGGGGAAAGTACTTTTACACAACTGCAATTAAAACCAAGGGGTATCTGAATGTTAAACCACACCAAGTTTGATTTAAGCATGGCAAGTAAACACCCTCTGCACTTGAGGATACCACAAAGCACATTAAACCACTGACCAACATGTGATtatcattttcactttcattgcAATTGTGTCACTttggataagggagtctgctcTAGTGATTGAGCTtcctttttaaacaattaaaaatgcatacattttctcCAAACTAATCTTGGACTGTTCTCAAATGAACAAGTTGCAAAAACTGCATCCACCCATCAGACAGTTTGGATTTTAACAATACTCTGAACACTTGTGTGGGTGCAGATATCCTTCAAGCATTAGCTTCAaggcaggaaaacaaaccacacaatcaagtacaaaaaaaaaaagtttattaacAAAGTGCCAACAGTGTGCTGCAGCCTCTAGTCCACTCAGGCTCAGGGTTGGCTCATCTTCAGGGCACCCAACTCTGCAGGGACAATACAGGTATACATTAGACACAGCTCTCACCGTGGGGACAGTCGGCGGCTCAGAGCTGTGTCTAATGTATACCTGTATTGTCCCTGCAGAGTTGAGCAGCCAGAGTGTGGCCTGATGGGCTGGGAGGCTGTGTGGAGGTGAGTCCTAATCATGTGGAAAACTAGACCCTATTGTGAACAACCTTGGTGAGTTATTTGCATTAAAGCAGGTTTCTTTAAGATCCCTCTGTACACATTCCATTAACTTTATGGGTGTTTGCAGTCTTTATAAACTGAACTCCAAAAGCTAGTGAAAAGCATTTCTATTGGCTAAGCACTGCGTTTTTGGCTGTAGTGCGATGCCGTATGTCCCCAGGACTATGGGCAATATTGCAAAGCCATGTGCATGGTGTAGGGTTGGGTGATATGACCTAAAATCTTTTAAGGTTTGGGGACAATACACAATGTATAGATTTCTTGTTCACCAAACAAGCTGCAAAATAAGACCAAATACCTAATTCAAAAGTTTTctttaatcaataaatatgcaaaatgtacCACTTGCCAGCCAGTCATAAATGTACATTATCCTTTTACCTGACTTTAAAggagtacatttaaataaaccttcTAGTATTGCtgtaaaaatgcacaaaataataaatgcatgtacTTGCcgtcaaactacattttgaagAAAGTTTGGCATACAAAAGCCTGAAAAATCGACCATGAAACCTGCAGtaattgtaaaacaaagtatagttttgttttatggtcACATTACACAATGGTAATCGCACAACCCATGCACTGTAAAATAGTGTAGGTTCAGATTCACCACATCTGGGTTTTGTGGTGCATTTGATTTGTTCTTGCTAAACCAGTAAATTACTTCACTATGATGGTATGGTTTAGATTTGAAATCTGCTTATTGGTACAACACTGTATtatagttaaaatgtatttgcttgtttttagtGTACAATTCAAACATTAACCGTTTTAACTTCATTATCCGCTTTTTAAAATTTAAGCGGAACATTCAACAACATAACTCcacaaactaataattaaaataacactgcACTTCATAAGCAGTTGCATCTCCTGATTTAACCATCTCAACTAATTTACAAACAATGCAAATTAGGTGGCAACACCACCGAGACGCATTTGCTccaattttaatttcttctccCACCCAAGCTTTATAAATTAAGGCGATTGGCCACACAAATGATTGACAAGAatttcctgcaaagtgattggctgTGTAATTTGTTACTCCTCCCATATTCCATGGTCTTGGGAACTGCAGCTATAAATGTCATAAATCGGAGTGTGgagtttgtcatttttaaatattttgcattttaaactacaTCGCCCAGCCCTAGCATGGAATTGTTGGGACCCTGCTGCTGTGCTCTGCTTTCCTGGGGTCTGCCTCTTCCTCTCGCATGTTTGCTGCTGTATGTCCCAGTGATGAAAACCTTGAGTAGGAAGTGCCGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU194159 False 1515 lncRNA 0.48 3 9098172 9103435
TU194160 False 2756 lncRNA 0.42 5 9095671 9103798
TU194161 True 2793 lncRNA 0.43 5 9095671 9108363

Neighbor

gene id symbol gene type direction distance location
AMCG00005747 LOC107744803 coding downstream 42245 9043131 ~ 9053426 (-)
AMCG00005748 NA coding downstream 64993 9027129 ~ 9030678 (-)
AMCG00005744 NA coding downstream 162213 8906411 ~ 8933458 (-)
AMCG00005743 LOC106523455 coding downstream 200356 8886096 ~ 8895315 (-)
AMCG00005797 NA coding downstream 271635 8821543 ~ 8824036 (-)
AMCG00005776 nsrp1 coding upstream 74152 9182515 ~ 9192061 (-)
AMCG00005778 NA coding upstream 86069 9194432 ~ 9201293 (-)
AMCG00005779 NA coding upstream 95552 9203915 ~ 9206461 (-)
AMCG00005777 NA coding upstream 165422 9273785 ~ 9282740 (-)
AMCG00005786 NA coding upstream 225696 9334059 ~ 9339730 (-)
G154126 NA non-coding downstream 70792 8987281 ~ 9024879 (-)
G154010 NA non-coding downstream 365522 8729803 ~ 8730149 (-)
G153980 NA non-coding downstream 507449 8574192 ~ 8588222 (-)
G153779 NA non-coding downstream 1074031 7984240 ~ 8021640 (-)
G153778 cct6a non-coding downstream 1111740 7982030 ~ 7983931 (-)
G154157 blmh,LOC106612652 non-coding upstream 20407 9128770 ~ 9139826 (-)
G154234 git1 non-coding upstream 217159 9325522 ~ 9330533 (-)
G154235 NA non-coding upstream 222980 9331343 ~ 9332033 (-)
G154237 NA non-coding upstream 235392 9343755 ~ 9393333 (-)
G154260 NA non-coding upstream 327517 9435880 ~ 9437899 (-)
G154142 NA other downstream 3098 9090422 ~ 9092573 (-)
G153806 NA other downstream 970986 8091748 ~ 8124685 (-)
AMCG00005704 NA other downstream 1094266 7999336 ~ 8001405 (-)
G153733 auts2 other downstream 1307350 7785554 ~ 7788321 (-)
AMCG00005685 NA other downstream 1949864 7109218 ~ 7145807 (-)
G154250 NA other upstream 316927 9425290 ~ 9434940 (-)
AMCG00005850 NA other upstream 1187236 10295599 ~ 10352782 (-)
AMCG00005862 NA other upstream 1435171 10543534 ~ 10551355 (-)
AMCG00005839 LOC103367321,LOC107729686,LOC103398303 other upstream 1630181 10738544 ~ 10752114 (-)
G154677 ef2,eef2,LOC106613766,LOC101482186,LOC107384141,LOC108427162,LOC108414462,LOC102796634 other upstream 1735478 10843841 ~ 10912745 (-)

Expression


Co-expression Network