AMCG00006433


Basic Information

Item Value
gene id AMCG00006433
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4351652 ~ 4360196 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006433
ATGACAAGAATGTGTGCCAGTCTGCTAGTCACCTGCCTTATATGGTGCTGTGatggatatatatgtatattcatgtCTACAGAGGCCAGTATCAACAGAGGGTTCTGCCGCTCCCCTCCTATGATGATCGCGGGGGGGCGTGTGTTTGTGGTGCCCTGTATTCAACAGATCCAGAGGATCTCGCTCAACACATTGACTCTGAATGTGAAGAGTGATAAAGTGTACACGCGCCATGGCGTGCCCATCTCGGTGACTGGCATCGCTCAGGTGAAGATCCAGGGTCAGAATAAGGAGATGCTGGCCGCTGCATGCCAGATGTTCATGGGGAAGTCTGAGCAGGAGATCACCCACATCGCGCTGGAGACGCTGGAGGGGCACCAGAGGGCCATCATGGCGCACATGACGGTGGAGGAGATCTATAAGGATCGTAAGAAGTTCTCCGAGCAGGTGTTCAAGGTGGCGTCGTCCGACCTGGTGAACATGGGCATCAGTGTGgacTATCTGCACTCTCTGGGGAAGGCCCGCACTGCGCAGGTGCAGAAGGACGCTCGTATCGGTGAGGCCCAGGCCAAGCGAGATGCCGTCATCAGGGCACAGAGGGACTTCGAGCTGAAGAAGGCCGCCTACGACGTGGAGGTCAACACCAAGCAGGCCGAGTCGGACTTGGCCTACCAGCTGCAGGTGGCGAAGACGAAGCAGCGCATCGAGGAGGAGAAGATGCAGGTGATGGTGGTGGAGCGCGCCCAGCAGATCCTGCTGCAGGAGCAGGAGATCACGCGGCGGGAGATGGAGCTGGATGCCAAGGTCAAGAAGCCAGCCGACGCGGAGAGATACAGGCTGGAGAGACTGGCCGAGGCAGAGCGtctCCAGATGATCATGCAAGTAGAAGCTGAGGCCGAGTCCATCAGGATTAAAGGCGAGGCGGAAGCATTCGCAGTGGAGGCCAAGGGCAGGGCTGACGCCGAGCAGATGGCCAAGAAAGCCGAGGCCTTCCAGCAGTACAAGGAGGGAGCCATGGTGGACATGCTGCTGGAGAAGCTGCCCCTGATGGCGGAGGAGATCAGCAGGCCCCTGTCCCAGGTCAAGAAGGTGACCATGGTGTCCAGTGGCAACGGGGAGCTGCTGTGCAGAGTCTACACTGGGTCGGTTTCCGCGCTTGTTCATTTCGTGTAG

Function

GO: NA

KEGG:

id description
K07192 FLOT; flotillin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006433 True 1173 mRNA 0.58 12 4351652 4360196

Neighbor

gene id symbol gene type direction distance location
AMCG00006432 NA coding upstream 85409 4254334 ~ 4266243 (+)
AMCG00006424 ino80e coding upstream 161566 4187593 ~ 4190086 (+)
AMCG00006423 NA coding upstream 166342 4179050 ~ 4185310 (+)
AMCG00006412 NA coding upstream 199961 4147704 ~ 4151691 (+)
AMCG00006420 NA coding upstream 217086 4133868 ~ 4134566 (+)
AMCG00006438 NA coding downstream 81765 4441961 ~ 4450469 (+)
AMCG00006446 NA coding downstream 128301 4488497 ~ 4496374 (+)
AMCG00006444 NA coding downstream 136210 4496406 ~ 4516083 (+)
AMCG00006442 NA coding downstream 181916 4542112 ~ 4562075 (+)
AMCG00006443 grm8,grm8a,LOC108412277 coding downstream 210328 4570524 ~ 4571515 (+)
G109662 tubb,LOC108432309 non-coding upstream 16202 4334323 ~ 4335450 (+)
G109660 NA non-coding upstream 22374 4328869 ~ 4329278 (+)
G109656 NA non-coding upstream 35187 4314631 ~ 4316465 (+)
G109597 NA non-coding upstream 121168 4230234 ~ 4230484 (+)
G109575 NA non-coding upstream 182546 4168084 ~ 4169106 (+)
G109655 NA non-coding downstream 13952 4374148 ~ 4377377 (+)
G109713 NA non-coding downstream 108195 4468391 ~ 4473008 (+)
G109721 NA non-coding downstream 158721 4518917 ~ 4521249 (+)
G109767 NA non-coding downstream 562936 4923132 ~ 4924794 (+)
G109779 NA non-coding downstream 657893 5018089 ~ 5020403 (+)
AMCG00006413 NA other upstream 183700 4159523 ~ 4167952 (+)
G109570 NA other upstream 195903 4152816 ~ 4155749 (+)
G109538 NA other upstream 387656 3963597 ~ 3963996 (+)
AMCG00006393 ppp1r11,LOC107711309 other upstream 486920 3858934 ~ 3864732 (+)
AMCG00006387 NA other upstream 702741 3637743 ~ 3648911 (+)
G109714 NA other downstream 116738 4476934 ~ 4477570 (+)
AMCG00006445 NA other downstream 164610 4524806 ~ 4527738 (+)
G109781 NA other downstream 664699 5024895 ~ 5025906 (+)
G109795 wasl,wasla,LOC105018628 other downstream 720685 5080881 ~ 5098698 (+)
AMCG00006460 wasl,wasla,LOC107698525 other downstream 734075 5094271 ~ 5107022 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010470 flot1b coding NC_007127.7 CM002900.2 10287588 ~ 10316359 (-)
grasscarp (Ctenopharyngodon idella) CI01000016_04181435_04188590 FLOT1B, FLOT1, FLOT1A coding CI01000016 null 4181263 ~ 4188590 (-)