AMCG00007470 (apba2,LOC108228832,LOC102306122,LOC103462423,LOC106961236)


Basic Information

Item Value
gene id AMCG00007470
gene name apba2,LOC108228832,LOC102306122,LOC103462423,LOC106961236
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19482612 ~ 19512979 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007470
ATGGCGCACAGAAAAAGGCAAGGGACAACCAGCGGCATGGCGGAGCCCAGAGCACGCCCTCTGCCTGCAGCCATCCCCCCCCTGGAGCCAGAGGAGGAACCTGAGCTGGAGGAGCTGAGGGAGCCGGGGGTCCAGGAGGGGCCGGGAGTGGTGCAGCACTCGTTTCACATCGAGGACCCTGAACTGAAGGACAGCCGCCCACCCACCCCCGAGCCCCCGGACCAGGACTGCCAGGACCAGAGTGGAGATGGTGACTCCAGCTCGGACTATGTGAACAACACATCAGAGGAGGAGGACTACGATGAGGGGCTGCCGGAGGAGGACGAAGGCGTCACCTACTACATCCGCTACTGCCCGGAGGATGACAGCTACCTGGAGGGCATGGACTGTAATGACAGGGACTACATCCCGCACCCTGAGGCTCCAGGTGACACAGACGAGTGCCAGGAGGCTGTGGAGGAGTGGGCTGAGTCCGAGGGGCAGTGTCTGTCCCTGGAGGCAGACAGGGATGATGAGCAGGCCTACGAGGAGCACCTGGAGCAGCCCCTGGATGACCATGCCATCCCTGCCGCCTCCCTGCAGCCTCCGCTcctgggagaggaagaggaggaggatgtagaagaggaggaggaagatgaggaTGATGAAGGAGAGGAGAGCGAGGAGTACTGCCCTGCTGAGGAGCCGTACCCTCAGGACTATTACGCCCCAGAGGCCAATGGGAATTCGGTCAGGGCGTCCCCTTACCGGACCCGCAAGGGGGGCGATGGGGAGGGCGGTGAGGACCAGGAGGAGGACATTGACCAGATTGTGGCCGAAATCAAGATGAGCATGAGTATGGGCAGCCTGAGCAGCGCCACCGACCCGAGCCCCGAGGAGCCAGGCGTGGACGGGGTGCCAAAGGACTTCCAGGACGCTGCTGTCAAGGCTGACCCCGCCCCCTGCGCCGGCAATCGCCACGAAGGGAGGCCCAAGTCGCTGAACATCCCCACCTCCACCCGGCACAATGCGGAGGTGCAGCGGGGCTTCAAAGTGCGTGCCCGGACTCCCGAGGAGCGGCAGAAGTGGGCTCAGGAGCAGGTGTCCAGTAATGCAGAACAGCCCAGAAAACAGCAGCGATCAGATCTTAACGGTCCtgctgaaaataacaacatCCCAGAGCAAACAAAGAAGACGGCCTCTTTCCCTAGCTTTGTGGATGTTCCAGGGCCCTGTGAGCCAGAGGACCTTATTGATGGGATCATCTTTGCAGCCAATTACCTGGGCTCCACACAGCTCCTGTCCGAGAGAAACCCCTCCAAAAACATACGCATGATGCAGGCTCAGGAGGCCGTGAGTCGTGTCAAGAGCCCAGAAGGGGATGCCCAAACGCTGACTGAGGTGGACCTGTTCATCTCCACACAGAGGATAAAGGTGCTGAATGCAGACACACAGGAGACGATGATGGACAATGCCCTGCGGACCATCTCCTACATTGCAGACATCGGGAACATTGTGGTTCTGATGGCGCGACGCCGCATGCCGCGCTCCGCCTCGCAGGACTGCATCGAGACCACGCCCGGCACCCAGGAGGGGAAGAAGCAGTACAAGATGATCTGCCATGTCTTCGAGTCTGAGGACGCACAACTTATCGCACAGTCTATTGGGCAGGCATTCAGTGTGGCCTACCAAGAGTTCCTGAGAGCCAATGGCATCAACCCCGAGGACCTCAGCCAGAAAGAATACAGCGACATCATTAATACTCAGGAGATGTACAATGATGACCTCATTCATTTCTCCAActcagaaaactgtaaagagCTGCAGCTGGAGAAGGTAAAGGGGGAGATCCTTGGCGTGGTGATCGTGGAGTCTGGCTGGGGCTCCATCCTGCCCACCGTCATCCTTGCCAACATGATGAATGGGGGCCCGGCGGCACGCTCTGGCAAGCTGAGCATCGGGGACCAGATCATGTCCATCAATGGGACCAGCCTGGTGGGCCTCCCACTTGCCACCTGCCAGGGCATCATCAAGGGCCTGAAGAACCAGACGCAGGTGAAGCTAAACATCGTGAGCTGTCCTCCTGTCACCACCGTGCTCATCAAGCGGCCAGACCTCAAGTACCAGCTGGGCTTCAGTGTGCAGAATGGCATTATCTGCAGCCTGATGAGGGGTGGCATCGCGGAACGCGGGGGGGTGCGAGTCGGCCACCGCATCATTGAGATCAACGGGCAGAGCGTGGTGGCCACGGCACATGAGAAGATAGTGCAGGCCCTGTCCAACTCAGTGGGCGAGATCCATATGAAGACCATGCCGGCAGCGATGTTCAGACTGCTGACAGGACAGGAGACCCCCATGTACATCTAG

Function

symbol description
apba2 Enables identical protein binding activity. Predicted to be involved in chemical synaptic transmission and regulation of synaptic vesicle exocytosis. Predicted to act upstream of or within in utero embryonic development; locomotory behavior; and regulation of gene expression. Predicted to be located in synaptic vesicle. Predicted to be active in several cellular components, including Schaffer collateral - CA1 synapse; dendritic spine; and plasma membrane.

NR:

description
PREDICTED: amyloid beta A4 precursor protein-binding family A member 2-like isoform X4

GO: NA

KEGG:

id description
K20055 APBA2, X11L; amyloid beta A4 precursor protein-binding family A member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007470 True 2346 mRNA 0.60 11 19482612 19512979

Neighbor

gene id symbol gene type direction distance location
AMCG00007459 NA coding downstream 295520 19182599 ~ 19187092 (-)
AMCG00007460 sord coding downstream 303566 19168814 ~ 19179046 (-)
AMCG00007463 NA coding downstream 342160 19137840 ~ 19140452 (-)
AMCG00007461 NA coding downstream 355592 19108984 ~ 19127020 (-)
AMCG00007462 LOC106562148 coding downstream 381232 19087202 ~ 19101380 (-)
AMCG00007471 mcee,LOC107750491,LOC107670763,LOC106587249 coding upstream 67439 19580418 ~ 19583227 (-)
AMCG00007475 NA coding upstream 90116 19603095 ~ 19622942 (-)
AMCG00007474 NA coding upstream 130974 19643953 ~ 19652843 (-)
AMCG00007477 NA coding upstream 201214 19714193 ~ 19717796 (-)
AMCG00007479 NA coding upstream 211228 19724207 ~ 19751795 (-)
G23982 NA non-coding downstream 1525 19480014 ~ 19481087 (-)
G23875 NA non-coding downstream 581015 18901365 ~ 18901597 (-)
G23867 NA non-coding downstream 615133 18866767 ~ 18867479 (-)
G23854 NA non-coding downstream 652525 18829865 ~ 18830087 (-)
G23843 NA non-coding downstream 697475 18781214 ~ 18785137 (-)
G24003 NA non-coding upstream 66802 19579781 ~ 19579984 (-)
G24102 NA non-coding upstream 354879 19867858 ~ 19912916 (-)
G24213 NA non-coding upstream 775544 20288523 ~ 20288842 (-)
G24216 NA non-coding upstream 817721 20330700 ~ 20330902 (-)
G24218 LOC100538179 non-coding upstream 822092 20335071 ~ 20337168 (-)
G23838 NA other downstream 704974 18776360 ~ 18777638 (-)
AMCG00007418 fem1b other downstream 1274592 18202459 ~ 18208020 (-)
G23661 NA other downstream 1423663 18055470 ~ 18058949 (-)
AMCG00007375 NA other downstream 2860707 16469467 ~ 16621905 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other downstream 3137032 16320997 ~ 16345580 (-)
AMCG00007481 fam63b,LOC107750498 other upstream 278722 19791701 ~ 19799752 (-)
AMCG00007487 NA other upstream 402167 19915146 ~ 19923153 (-)
AMCG00007494 NA other upstream 658350 20171329 ~ 20222004 (-)
G24217 NA other upstream 818534 20331513 ~ 20331811 (-)
AMCG00007500 NA other upstream 949525 20462504 ~ 20472919 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location