AMCG00007759 (cib2,LOC107757746,LOC107598895,LOC107698385,LOC107573330,LOC107752320)


Basic Information

Item Value
gene id AMCG00007759
gene name cib2,LOC107757746,LOC107598895,LOC107698385,LOC107573330,LOC107752320
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28951619 ~ 28960104 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007759
ATGaatcttttctttctctgttgtaGGTTGCATGGAAGATACCACGAACTGGCACCTAATTTAGTACCAATGGACTACACTAATGACCCTGATGTTAAACTCCCTATACAGCTCATAGTAAACATGCCTGAATTAAAGGAGAATCCCTTTAAGGACCGCATTGTGGAGTCATTCTCTGAAGACGGGCAGGGCAACCTCAGCTTCAATGATTTTGTGGATATGTTTTCAGTTCTCAGTGAAATGGCTCCTCGAGAGCTAAAGGccatatatgcatttaaaatatatgATTTCAACACAGACAATTTTATCTGCAAGGAGGACTTGGAGAAAACCCTGAATAAGTTGACACGAGAGGAGCTCACAGCTGAGGAGGTGAATTTGGTGTGTGAGAAAGTGATCGAGGAAGCAGATCTGGATGGAGACGGCAAGCTAGCCTTTGCAGACTTTGAAAATATGATCTCCAGGGCTCCTGACTTTTTAAGGTAA

Function

symbol description
cib2 Predicted to enable calcium ion binding activity. Acts upstream of or within camera-type eye development; mechanosensory behavior; and neuromast development. Is expressed in central nervous system and cranial ganglion. Human ortholog(s) of this gene implicated in Usher syndrome type 1J and autosomal recessive nonsyndromic deafness 48. Orthologous to human CIB2 (calcium and integrin binding family member 2).

NR:

description
PREDICTED: calcium and integrin-binding family member 2-like

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0043010 camera-type eye development biological_process
GO:0048884 neuromast development biological_process
GO:0007638 mechanosensory behavior biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007759 True 486 mRNA 0.42 3 28951619 28960104

Neighbor

gene id symbol gene type direction distance location
AMCG00007760 dapk2a coding downstream 73602 28866604 ~ 28878017 (-)
AMCG00007761 NA coding downstream 85034 28862578 ~ 28866585 (-)
AMCG00007758 NA coding downstream 107813 28777755 ~ 28843806 (-)
AMCG00007762 NA coding downstream 189842 28754480 ~ 28761777 (-)
AMCG00007748 NA coding downstream 277357 28647011 ~ 28674262 (-)
AMCG00007770 frmd5,LOC108435336,LOC102299895 coding upstream 120047 29080151 ~ 29100489 (-)
AMCG00007771 frmd5,LOC108435336,LOC107562133 coding upstream 154276 29114380 ~ 29122313 (-)
AMCG00007772 NA coding upstream 273655 29233759 ~ 29256619 (-)
AMCG00007779 NA coding upstream 328965 29289069 ~ 29296557 (-)
AMCG00007780 NA coding upstream 416142 29376246 ~ 29377079 (-)
G25987 NA non-coding downstream 217170 28734112 ~ 28734449 (-)
G25985 NA non-coding downstream 218625 28732764 ~ 28732994 (-)
G25968 NA non-coding downstream 249082 28676840 ~ 28702537 (-)
G25972 NA non-coding downstream 251770 28696465 ~ 28699849 (-)
G25768 NA non-coding downstream 1284547 27662224 ~ 27667072 (-)
G26092 NA non-coding upstream 71306 29031410 ~ 29049165 (-)
G26115 NA non-coding upstream 270839 29230943 ~ 29232708 (-)
G26147 NA non-coding upstream 351514 29311618 ~ 29311943 (-)
G26165 NA non-coding upstream 405520 29365624 ~ 29366245 (-)
G26231 NA non-coding upstream 648213 29608317 ~ 29608596 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other downstream 30496 28894693 ~ 28921123 (-)
AMCG00007704 NA other downstream 1581100 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 2880771 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 3320027 25630792 ~ 25631592 (-)
G25422 NA other downstream 3686668 25264332 ~ 25264951 (-)
AMCG00007768 NA other upstream 40945 29001049 ~ 29013947 (-)
AMCG00007817 NA other upstream 2231906 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 2378612 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 2844795 31804899 ~ 31816151 (-)
G26961 LOC101154678 other upstream 5909331 34869435 ~ 34869807 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000330_03779829_03785869 CIB2 coding CI01000330 null 3779829 ~ 3786867 (+)