AMCG00007770 (frmd5,LOC108435336,LOC102299895)


Basic Information

Item Value
gene id AMCG00007770
gene name frmd5,LOC108435336,LOC102299895
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29080151 ~ 29100489 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007770
tatctcgTCTTCCTGCAGATCAAGAGAGATCTGTACCATGGCCGGCTGCTGTGCAAAACGTCAGACGCTGCCATCCTCGCCGCTTACATCCTTCAAGCTGAAATTGGGGACTACGACCCAGGCAAGCACCCTGAAGGCTACAGCTCCAAGTTCCAATTCTTTCCAAAACATTCAGAGAAGCTGGAACGACGGATCGCAGAGATTCATAAGACTGAGCTGAGTGGGCAGTCCCCCGATACGTCCGAGCTGAACTTCCTTCAGAAAGCCCAGATGCTGGAGACATACGGCGTGGATCCACATCCTTGCAAGGACGTGTCGGGGAACCCTGCCTTCCTCGCCTTCACCCCTTTTGGGTTTGTGGTGCTTCAGGGAAACAAGAGGATCCATTTTCTTAAGTGGAATGAGGTGACAAAACTGAAGTTTGAAGGAAAGACATTCCATATATATGCAAATCAGAAGGAGGACAAAAAGATCATTTTGACATACTTTGCACCAACACCTGAAGCCTGCAAGCATCTGTGGAAGTGTGGAGTGGAGAACCAGGCCTTCTACAAGCTGGAGAAATCGAGCCAGGTGCGCACCGTGTCCAGCAGTAACCTATTTTTTAAGGGAAGTCGGTTCCGATACAGAGCTGGTTTGGTGCCCAGCAGGAGCTGCCCATCCATCACCCACGGGCCACGCCTCAGCAGCGTGCCACGCACACGCCGAAGAGCTGTACACATATCCATCATGGAAGAAGGGGCCACCATGGTGAAGTGCTTGATCAAGATCAAAACCAAGGTGAACGTTCACCTGCGGATGATCAACCACTGCTACCGTGATGTGAAGGTGCGGGTCTTGAGCCTGGGGCCGCGGATCTTTGGCAAGGCACTGGGTGCTCTCCCAATTTTCCCAGCTCTGGCCAGTTACAGCCATTCTGACCAGCCCCTCTCCTCCCCACTGCTGGGCACTTCGCAGAGCTTCTCCCAGCCGGGCACCTCCACCACCTCCGCCAGCACCTCTGCAGGTCTGGAGTCCCTGCGTGACAGCGCCCACTCCACCCCAGTGCGTTCGGCCTCCCATGGCGACTCGTTCGTGCCACGTTCCCGCAGCCTGGTGACGGACAGCTGCGAGGGGGGCAGCGCCGTGATCTCGGACGAGATTTACAGCCCCTCACATAGCGTGCTGCCCACCCCCGTTGCCGAGCACAGCCTGGAGCTGGCCGTCGCGAGGCAGATCAACGGTGCCCCATGCAGCATTGAAGAGGAGAAAGAGTCAGAGGCAGGGACCCCCATATCCGGAGACATGATTGAGTTCGGTCCCGATGGTAAAGTCCTGAACCCTGACCACTCCAGGGAGGCCGGGGGGGCGTCCTCACTGGGCGAAGTGGAACAGGTGAATAAGTTTGTTTTAAGTGTCCTCCGTTTGCTCCTTGTGACCATTGGACTCCTCTTTGTCttgctcctcctcctcatcgTTCTTACCGAGTCTGACCTTGACATTGCATTTTTACGTGATATTCGGCAAACCCCTGAGTTTGAGCAGTTCCATTACGAATACTTTTGTCCCCTCAGGCGATGGTTTGCCTGCAAGTTCCGCTGGCTGGTGGGCCTGCTCATTGACACGTGAAAAACAAGGGAAAAATGGGCTGTAATACCGGctgcccccccctctctcctcccccatGGGGGATCAGAGAAGATGATAACACAACTACTGCTGCAGTTTCCAACATCACAATGATGGAGTGCGGCAACCATCTGACCATGAACCCAGCTTCCCTCATGAAAACTGCAGACACCGCGTCATGGAAGTCTCCTGGACAGATtctgaagactttttttttttttttttttgcgttcctcttttcacatttctttttaaagaaaaaagggataaactgattatatatatttttttctattattactTTCTTTTCTCCAAAATATCAGGTCATTGcaggaattttatttttacaaaaaatctaaatgaaaaacgacaaaaaaacaacagacaaatcaaatgaaaacagtgCGCACAGTTCCTTTTGGAGGGGAAAACGAAGTGAAACGTTATGAacggagattaaaaaaaatgccttcTTTATCttctatttattcattttgatgTCAGTtgttatttgctttaaaaaaattgtgaaaCATACAGTTTGGAGAGATGTTTATCATAGGTATTCCATTATGTTGTAACAAtggtattaaaaaacaaatgagattGAAGTTTTATAGATGggtaaaaagcaaacaaagctgAGCTGACAGAATTCCCATTTTCATCTTGGCAATTCTGCTGATTTTCTTTAACTTGCAAATGGAATTGAAGTGAGAAGTGAACGCCTGAGGCTGACAATTAGGTCCAAGTTTGGTAAGAACATCTGAAAATTGGGACCTGAGGGTAATTATCGTAAGCAGAAGTGGAGAGTTATACATATTGCAAGGGACGTCACAGAGATTTAAAGCATTGTCAATAAGgcttcaaatgtattcttttaGAGAtgccatatttttttaaaaaacaaaagcaacttTACTAATCTGTGCACACTTTGTGTTGTGGCGGGAAGGTTGACAGAGAGCGGGGGCAGAATGAGCAAATAGCGGTTCTTGAATTTTGCTGTCTTATTTCAAAGAGCTTCAAATATACTTTCATAGGAATTCAATTATGTGTAAGCAGTAGCAAGCTGTGTAGtagaattcagatttttttaaataatatattaaaaagaatacaattaaattaaagtttaataacTTAAATAGTTAAAATGGTGTACTGTTATGTGACCTAGCAGTGTCAGTACCTGGTAGAAAAGTGTTAATGGTCTACCCCCCGAAGACATTTACTAACACCTGTAGATCCAGTTTAGCTAGATGTGCAATATAATAAAGCTATGGTTTTAGTgcaaaaaaaagtttcaaaccTTTTGTTCGTGTGCATTTGTTAGTGCATCAGcatttttccttgttttgtttttgataactCTTCCCAATTGATTTCCAAGTACAATATTAAGAAGAGACATGAAAAGTGGTggtttttcaatttaaatctgGGTTTTCAAATCCAAATTGACTATGCTATTaagtttttaattgtgaa

Function

symbol description
frmd5 Predicted to be located in cytoskeleton and membrane. Predicted to be integral component of membrane. Orthologous to human FRMD5 (FERM domain containing 5).

NR:

description
PREDICTED: FERM domain-containing protein 5 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007770 True 3099 mRNA 0.45 10 29080151 29100489

Neighbor

gene id symbol gene type direction distance location
AMCG00007759 cib2,LOC107757746,LOC107598895,LOC107698385,LOC107573330,LOC107752320 coding downstream 120047 28951619 ~ 28960104 (-)
AMCG00007760 dapk2a coding downstream 202134 28866604 ~ 28878017 (-)
AMCG00007761 NA coding downstream 213566 28862578 ~ 28866585 (-)
AMCG00007758 NA coding downstream 236345 28777755 ~ 28843806 (-)
AMCG00007762 NA coding downstream 318374 28754480 ~ 28761777 (-)
AMCG00007771 frmd5,LOC108435336,LOC107562133 coding upstream 13891 29114380 ~ 29122313 (-)
AMCG00007772 NA coding upstream 133270 29233759 ~ 29256619 (-)
AMCG00007779 NA coding upstream 188580 29289069 ~ 29296557 (-)
AMCG00007780 NA coding upstream 275757 29376246 ~ 29377079 (-)
AMCG00007778 NA coding upstream 278555 29379044 ~ 29386305 (-)
G26092 NA non-coding downstream 30986 29031410 ~ 29049165 (-)
G25987 NA non-coding downstream 345702 28734112 ~ 28734449 (-)
G25985 NA non-coding downstream 347157 28732764 ~ 28732994 (-)
G25968 NA non-coding downstream 377614 28676840 ~ 28702537 (-)
G25972 NA non-coding downstream 380302 28696465 ~ 28699849 (-)
G26115 NA non-coding upstream 130454 29230943 ~ 29232708 (-)
G26147 NA non-coding upstream 211129 29311618 ~ 29311943 (-)
G26165 NA non-coding upstream 265135 29365624 ~ 29366245 (-)
G26231 NA non-coding upstream 507828 29608317 ~ 29608596 (-)
G26342 NA non-coding upstream 1304509 30404998 ~ 30454628 (-)
AMCG00007768 NA other downstream 66204 29001049 ~ 29013947 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other downstream 159028 28894693 ~ 28921123 (-)
AMCG00007704 NA other downstream 1709632 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 3009303 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 3448559 25630792 ~ 25631592 (-)
AMCG00007817 NA other upstream 2091521 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 2238227 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 2704410 31804899 ~ 31816151 (-)
G26961 LOC101154678 other upstream 5768946 34869435 ~ 34869807 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 6902704 36003193 ~ 36010995 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012825 NA non-coding NC_007129.7 CM002902.2 26456681 ~ 26461427 (+)
grasscarp (Ctenopharyngodon idella) CI01000013_00657437_00692874 FRMD5 coding CI01000013 null 657437 ~ 692874 (+)