CI01000013_00657437_00692874 (FRMD5)


Basic Information

Item Value
gene id CI01000013_00657437_00692874
gene name FRMD5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 657437 ~ 692874 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_00657437_00692874.mRNA
GATGCCAAAGGCCAGTATTTGTTCGACCTCATTTGCCACCATCTAAACCTGCTGGAGAAAGACTATTTTGGCATTAGATATGTCGATCCGGATAAACAACGGCACTGGCTGGAGTTCACCAAGTCAATTTCTAAGCAGATGAAATCACAACCTCCATTCACCATGTGTCTGCGGGTCAAGTTCTACCCACCAGATCCTGCTGCTCTAAAGGAGGAGATCACCAGGTATCTCGTCTTCCTGCAGATCAAAAGAGATCTGTACCACGGTCGTCTCCTCTGCAAAACATCTGACGCGGCCTTATTGGCAGCTTACATCTTACAAGCTGAGATTGGAGACTACGACCCAGGAAAGCATCCAGAGGGCTACAGCTCCAAGTTCCAGTTCTTCCCCAAGCACTCAGAGAAACTGGAAAGAAGGATTGCAGAGATCCACAAGACAGAGTTAATAGGTCAAACTCCAGAGACAGCTGAGCTGAAGTTCCTGCAGAAAGCACAAATGCTTGAAACATACGGCGTGGATCCTCATCCGTGCAAGGATGTATCTGGGAACCCGGCTTTCCTAGCCTTCACTCCGTTCGGTTTTGTCGTGCTTCAAGGGAACAAGAGAGTCCATTTCCTCAAATGGAACGAGGTGACCAAACTGAAGTTTGAGGGAAAGACATTCCATATATATGCAAATCAGAAGGAGGACAAAAAGATCATCTTGACATACTTTGCACCAACTCCAGAGGCCTGCAAGCACCTTTGGAAATGCGGTGTTGAAAATCAAGCTTTCTACAAGTTGGAGAAGTCGAGCCAGGTTCGTACGGTGTCCAGCAGTAACCTGTTCTTCAAGGGGAGTCGTTTCCGCTACAGTGGAAGAGTAGCCAAAGAGGTAATGGAGCAGAGTGCAAAAATTAAACGGGAACCTCCAGAAATACATAGGGCTGGCCTGGTGCCCAGCAGAAGCTGTCCATCCATCACACACGGGCCACGGCTGAGCAGTGTCCCGCGCACCCGTCGGAGAGCTGTACACATATCCATCATGGAAGGTCTGGAATCCTTGCGGGACAGCGCTCACTCCACTCCCGTGCGTTCCGTGTCCCACGGCGACTCCTTCATGCCACGTTCGCGTAGCCATTTGACGGACTCCGGCGACGGGACGGCGGTCATCTCCGACGAGACCTACAGTCCCTCCGACAGCGTTCTGCCAACACCAGTGGCCGAGCACAGCCTGGAGCTGGCAGTCTCGCGCCAGATCAACGGCGCCCCCTGCAGCATCGAGGAGGAGAAAGAGTCGGAGGCTGGCACACCCTCTGTGGGCGACGTGGCCGAGTTAGGAGCGGACAGTAGGGCGGCAGGCTCCTTGCAGAGCGCAGGTGGGGAGGCCGCGCTCAGCGAGACGGAACAGGTGAATAAGTTTGTTTTAAGTGTACTCCGTCTGCTCCTTGTGACCATTGGACTCCTCTTTGTCTTGCTCCTCCTCCTCATCATCCTCACTGAGTCCGACCTTGACATTGCATTTTTACGTGATATCCGCCAGACCCCCGAGTTTGAGCAGTTCCATTACGAATACTTTTGTCCCCTCAGACGGTGGTTTGCCTGCAAGCTCCGCTGGGTGGGCGGGCTGCTCATTAACAAG

Function

symbol description
frmd5 Predicted to be located in cytoskeleton and membrane. Predicted to be integral component of membrane. Orthologous to human FRMD5 (FERM domain containing 5).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_00657437_00692874.mRNA True 1620 mRNA 0.53 13 657437 692874

Neighbor

gene id symbol gene type direction distance location
CI01000013_00561825_00581324 NA coding upstream 75861 560823 ~ 581576 (+)
CI01000013_00526975_00537006 SLC28A1 coding upstream 120363 526975 ~ 537074 (+)
CI01000013_00490680_00491519 CH25HL1.1 coding upstream 165807 490616 ~ 491630 (+)
CI01000013_00473761_00488628 NA coding upstream 168605 473138 ~ 488832 (+)
CI01000013_00441663_00456168 PSTPIP1A coding upstream 200981 441663 ~ 456456 (+)
CI01000013_00849127_00850710 ANKRD34C coding downstream 155716 848590 ~ 850969 (+)
CI01000013_00862608_00869073 IDH2, IDHP, IDH2.S coding downstream 169544 862418 ~ 869073 (+)
CI01000013_00870861_00871425 IDH2 coding downstream 177987 870861 ~ 871522 (+)
CI01000013_01007844_01029438 SEMA4B, SEMA4BA coding downstream 314970 1007844 ~ 1029459 (+)
CI01000013_01036536_01049545 NA coding downstream 343662 1036536 ~ 1049882 (+)
G77530 NA non-coding upstream 22598 616917 ~ 634839 (+)
G77518 NA non-coding upstream 144535 512151 ~ 512902 (+)
G77540 NA non-coding upstream 146185 508552 ~ 511252 (+)
G77502 NA non-coding upstream 199564 457325 ~ 457873 (+)
G77509 NA non-coding downstream 5165 698039 ~ 702077 (+)
G77528 NA non-coding downstream 13669 706543 ~ 707255 (+)
G77536 NA non-coding downstream 17242 710116 ~ 710507 (+)
G77712 NA non-coding downstream 90907 783781 ~ 784456 (+)
G77724 NA non-coding downstream 144455 837329 ~ 837561 (+)
G77533 NA other downstream 15959 708833 ~ 709549 (+)
G77695 NA other downstream 253647 946521 ~ 952969 (+)
G79309 NA other downstream 1773891 2466765 ~ 2467171 (+)
G80062 NA other downstream 2891134 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 3372059 4050837 ~ 4065829 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00007770 frmd5,LOC108435336,LOC102299895 coding CM030123.1 CM030123.1 29080151 ~ 29100489 (-)