CI01000013_04051081_04064651


Basic Information

Item Value
gene id CI01000013_04051081_04064651
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4050837 ~ 4065829 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_04051081_04064651.mRNA
ATATAAAAGCAAATAAATGCAAGGCAGTAGAAAGATGCAGTATCTACAGCCATAAGCACAACAAACATGCATTCGATTACAATCCCATCCAAAGTCCTGACAAATGATATTCATAAGCACAAATCCTTTATTCAGATGCTCTCTGGAAGAGAGTGCGAACAGTTGTTTTTTCAAAGAAGTCCATCACGTTTGGATGTCTTCTGAAACGTCACTGTGCCACACACACACTGCTCTCTCTTCCAGCATGACTCTCTCTTTTCTGAACACTCAGCATCCTCTGGTTGCCTCCCAAGAGGAAGTCTGGGATGTTAATGCGTTTTCCCCCACAAGGTACTGCCAAAATATTCTTAAAATAAGTGAACACTATCATAAGTTGCCCAAGGCTGTGTCAAACCACAAACCCAACTTAAAATGCATGCAGAGCAGAGATGATCATCAGCATGTGGTGTTGTGGTTGGAGGCCTTCCCAGGGCCAGATTCCAAGCTGCTCCGCAGTGATGGAACTGAAGCCATTAGCAATCGATTAGAGAACCAGCAGGCAGGCAGTGGCATCCTGGGAAGCCTGGTTGGGAATTATGCAAAAGGCACACTGAAGACTGTGTTTCTGGTGCCGACAGAAGCATGGCTCTGCTTTTGTCTGGTTCAGCAGGAGAGGCAGGGGATGACAGATGCGCCAATGAATCAAACAGGGCACCTGGAGAGGTTTTACCACAGCCACAAATACATCACCGCAGCGAAACCAAGTGGGCTTGCATGGGATAAAGTATTAAACCTTGTACCAGTACAAACTATCAAATCCATGTCTAAGCCAATTAAAAGATGCAGCATCGTGATTGATGGGGATGAGTCAAAATTAGGTTGTGCAAGTGACCTGACATGGCTAATGCTAAGAACCCATCAACTGCCCATACATGTGCAGTGCTACATATTTTTGAAGAAATGTGTCAAAAACTGGACTGGAGCACACATGGGTCGGACTGACAAAAACTCCCTTAATTTTGCACTAGTGTTAGAGGTCTTCTCTCACACTTTCTTACTGACTCTATTTGTGCTGGACAAGCATCATTTTGATGCAAATGAGAAAAAAGAAGCCACACTGTGTGATTCTGATCAAGGCATATTAGCCCCATGTCAAGAGGACGGAAAGGACCATCATATGACTACGATCACAGCCCAGCAGTTAAAGAGATAAACACTCAGGAATGCAGGCTATTCACAAGAACTTCAAGGTGTCTGTGAAATGCCGCTTTTTAAAGTCAAGTCTGTATTTATATAGTGCTTTAGTAAAAGAATCAATGCAACTTCCTCAAATAATTCTGCTGTAAATCTTCTCTAAAAAGACAATAGCGTCATTCTGTTCAAGTCAGTTTAGAGTTCAATAACTGTGTAAAGTTCATCAATTATGAAACCAGTTCAATTTAGTTATAAGTAGATATTCAAATCGTTATACGAGTCAGTTCAATGTTGATTCAATTCAGTTTAATAACAGTTGATGTTGCACAATTTGCCAATTCTGAAACAAATTCAATTCAGGAATAAATAAAGCAGCTCTACAGAAGCCAACAGTGTCATCATCCAGCTCAATTCAGTTCAAGTTTTGTTCTCATCCGATTGTGTAAGTGACCACACAATCCAAATGAGGAAAAGTTGGCCGATAACTTCACCGCAGATTCTTGGCTATGACATTTAGCTCATCCTTCCAGCCTCCCA
>TU91279
ATACCTATATGCCTGTTGGTCTTAACTACTAAAAAGAATCCATAAAATTGCCACTTAAATAATTTGTGTGAACATTTGTCTCCATAAAATAAATGTCAATTTCTTACCCCCTGAGAAACTATGCTGTATCTAATAGTAATCACTTACATTACATACTCTTTTAGATATCAACATATTTAATTAATTTAATTCCTCATGTTTTGTTTAAGAAACCAAGTGGGCTTGCATGGGATAAAGTATTAAACCTTGTACCAGTACAAACTATCAAATCCATGTCTAAGCCAATTAAAAGATGCAGCATCGTGATTGATGGGGATGAGTCAAAATTAGGTTGTGCAAGTGACCTGACATGGCTAATGCTAAGAACCCATCAACTGCCCATACA
>TU91262
TTCAGTTTAATAACAGTTGATGTTGCACAATTTGCCAATTCTGAAACAAATTCAATTCAGGAATAAATAAAGCAGCTCTACAGAAGCCAACAGTGTCATCATCCAGCTCAATTCAGTTCAAGTTTTGTTCTCATCCGATTGTGTAAGTGACCACACAATCCAAATGAGGAAAAGTTGGCCGATAACTTCACCGCAGATTCTTGGCTATGACATTTAGCTCATCCTTCCAGCCTCCCAAAAAAGGAAGCAACAGTGCCATGCTTTCGGACATCAACATTCTGAACACAGGAGGAATAATCCAATTGAATCCACACTAATCCAAATGAACACAGCGTGCGTAGCTGTGGTTATCCCGGGTAGGGAGAAAGGGGAAGGGAGATGCCTGCACCGCAGCTTATCAACTGTCAGTGGTTTGCTGCTGTAACAGGCGGTGTTATCAGGGTCAGCCCTGCTCGGGGATTGGAGGGCCCTACTGTGTCAAGTAAACACAGAAACCTGTCCTCATGCTTATCTGTCCTGGGAGAGAGAGACAGCCAGAGAGGAGAGGGATAGAGGGGAAAAAGAGCGAGGAGGTGGCAGAGGGGAGAGAAAAGGAGGAGGGGAGATTGAAAAGCAGAGAAAAGGGATCTGTCTCCATGGCAACCACAGTCGTCCACCCCCCACCCGTTTTCCCACTCCTCTGCAGAGAACTCTGGTGGTCTTTGTGTAACGCGATTCCACTAGAATGCACTGTGTGGATTAGTGCAGAGCAGTGCCCGCAGGGCTCAGACAGGGCCACAGTAAAGACATTATTACCCAGATCAAACGCTGTAATCACACAGCACCGAGGGGGCTTTCGCATCCACGCCAGATAAAGCCAAAGCCTGGCAATGCTCAGGTGATTAGGCCATTATTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_04051081_04064651.mRNA False 1710 mRNA 0.42 8 4050837 4065169
TU91279 False 385 lncRNA 0.34 1 4061647 4062031
TU91262 True 897 TUCP 0.49 1 4064933 4065829

Neighbor

gene id symbol gene type direction distance location
CI01000013_03952621_03964132 KIF23 coding upstream 86603 3952621 ~ 3964234 (+)
CI01000013_03949848_03950925 NA coding upstream 99544 3949848 ~ 3951293 (+)
CI01000013_03937929_03938255 FAM180B coding upstream 112576 3937929 ~ 3938261 (+)
CI01000013_03902606_03908849 IGHMBP2 coding upstream 141779 3902606 ~ 3909058 (+)
CI01000013_03885988_03895027 KIAA1147 coding upstream 155810 3885988 ~ 3895027 (+)
CI01000013_04084679_04088148 NA coding downstream 18645 4083814 ~ 4090171 (+)
CI01000013_04316134_04317091 NA coding downstream 250965 4316134 ~ 4317198 (+)
CI01000013_04344339_04347938 AAGAB coding downstream 279170 4344339 ~ 4348083 (+)
CI01000013_04425884_04426805 NA coding downstream 360579 4425748 ~ 4427010 (+)
CI01000013_04505188_04527744 NA coding downstream 439976 4505145 ~ 4527872 (+)
G80153 NA non-coding upstream 40285 4010315 ~ 4010552 (+)
G80105 NA non-coding upstream 102140 3946804 ~ 3948697 (+)
G80144 NA non-coding upstream 122287 3928322 ~ 3928550 (+)
G80143 NA non-coding upstream 123113 3927170 ~ 3927724 (+)
G80175 NA non-coding downstream 7393 4072562 ~ 4078376 (+)
G80493 NA non-coding downstream 50990 4116159 ~ 4116382 (+)
G80505 NA non-coding downstream 61745 4126914 ~ 4127129 (+)
G80518 NA non-coding downstream 118503 4183672 ~ 4183892 (+)
G80062 NA other upstream 466053 3584008 ~ 3584784 (+)
G79309 NA other upstream 1583666 2466765 ~ 2467171 (+)
G77695 NA other upstream 3097868 946521 ~ 952969 (+)
G77533 NA other upstream 3341288 708833 ~ 709549 (+)
G80845 NA other downstream 769909 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 1991129 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 2013393 6075400 ~ 6081684 (+)
G81994 NA other downstream 3270776 7335945 ~ 7338239 (+)
G82168 NA other downstream 3963169 8028338 ~ 8041343 (+)
G80168 NA non-coding upstream 5588 4055833 ~ 4056059 (+)
G80174 NA non-coding downstream 57 4062088 ~ 4062358 (+)
CI01000013_04051081_04064651 NA other downstream 2902 4050837 ~ 4065829 (+)

Expression


Co-expression Network