CI01000013_00849127_00850710 (ANKRD34C)


Basic Information

Item Value
gene id CI01000013_00849127_00850710
gene name ANKRD34C
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 848590 ~ 850969 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_00849127_00850710.mRNA
CTATTTATGCCAAAGCAACTGTTTTTAAGGCAGCCTATCAAATAAATCTAAAAAATACATACAAAATATAGAGGAAAACCGCGCAATTCATTTATTTAATAATGTCATTGATTCGATATTTATCCGTATTTTTTATCACTACATCACTATAGCACATTCAGATAAAACATTGATATACATTGAGAGAACACTGATATAATTTAAGGATTCATAAGGAAATACATGTTGAAACACAACACAAACACATTTTAGAATTTTCACGCAAATTCAAAGTTCCATTCGCACCTGATCCACCTGTCAGTTCAGCGTCTCTTTCAATAACTCATTCCTGCGCATTCAGGCTGCCACCTGGTGGCTCTTCAAAACAAACAGGCTAGTGATTTAATGCAGGGTTAAACACATGAACAGCACCTTTCCTTATTTCTAAAAATTGAAGTGTTTGTGACATGCAAATGTCTCTGAGATCTGCTTGATGGCTGTAGCAGCAGTCTGCTCTTGCCTTGCAGGACTGAGGCTGATTTGGGTCCAGTCTGGGTGATGGCTGACGTGCTGGAGCTCAGGACGGATGGGAACTCTCTGCTGAAAGCAGTATGGCTTCGCCGTTTGCGCCTTACAAGACTTCTCCTGGAAGGTGGAGCCTACATCAATGAAAGCAACGATCGTGGAGAGACGCCACTCATGGTGGCCTGCATGTCCAAACACTCTGACCAGCAGAGTGTCAGCAAGGCTAAGCTTGTCAAGTACCTTCTGGACAACAAAGCTGACCCTAATATCCAAGACAAAGCTGGAAGGACAGCCCTCATGCATGCATGCAGCCACAGGGCAGGACATGAGGTGGTCTCACTTCTACTGACCAACGGGGCTGATCCGAGTCTGGAGGACCGTCATGGATCTTCTGCTTTAGTCTATGCTGTCAACGCAGATGATAAAGAAACCTTAAAAGTTCTCCTTGATGCCTGCAAAGCCAAAGGCAAGGAGGTCATCATCATTACCACCGACAAATCGCCGTCTGGAACCAAAACTACCAAGCAGTACCTGAATGTTCCTCCGTCTCCTGAGTTGGATGAGAGGACATCTCTTGCACCATGTGCCTCACCGTCAGAGATAGATCTTCATGCATTGCCATCTCCCAGCAAAGAGGAGGAGAAGGACACTGTATTCAATTTTCAAACAAAGTTTAAGTCAACCTCAAACACAGCAGCCAAACTTCCCAATGGACTTACTTCCCCCAGTAAGAAGCCAGTGAACCCCAAGCGGGCTCGTCTACCCCAGCTGAAGCGACTACAGTCAGAGCCTTGGGGTCTGATTGCCCCGTCTGTGTTGGCAGCAGCAAATGAAGAGAGCAAGAGAGCCATCTCAGATGAAGATGTTGTTGCAGGTGTCAATGGTCTGAGCCTGTCTAAAAGAGGCACTCTGTCCCGGCATAACAGCGTGGACGGAAAGGACATCTTGTTTCCGATATTGGGAGATCAGACCGCAAAAATCTCCCAAACATCATCTTCCAAGGCCTCCTATGAGAGATCGCTAGCACAGCACCAACCCCTGGGACGGCGTAGCACTGTCCCCACAGAACAGGATGGCTGTGGAGGAAACTTGGGGCCAGCTAGCCTCAGAGACACACTGCACCGGAGGCGACTGGGGAATGAACACTACGACTCAGACTCCCAGCTGTACTCAGATTCCAGCATGCTAGACTCTCCTAAGGCACCCCTGGAGAGAAGGAAGCTCAATACATCCCCTCTTGCTATGCTTACAGGCTCACGAGAGTCCTTGGACAGCAATCCCAGTACCTCGTCCCCTAGCACAGCCAGATGCAGAGCACCTGGCCTACTGGAGCGGCGCGGCTCTGGAACACTATTGCTGGACTATATATCCCACACCCGCCCAGGTCACCTGCCCCCACTAAACGTCAACCCCAACCCTCCGATTCCAGATATAGGGGCAAGCAGCAAGCCCTCATCCCCACTTGCAGCAGGTATCAGACCAATAGCTCCCGTAGCACCCAACTCACCAAAGAGAAGCAACCTCAGGACGAAAAAGAAGCTTGTGAGAAGGCACTCTATGCAAGTGGAACAGATGAAGCAGCTTTCAAACTTTGAAGAGCCCAACCATCAATCTTGAAACTCAGTCTATGTAGATGTAGCAACTTTGACATCATTAATATACGTCTGAGATCTTGGGTAATATTGATGCTTAGGCAGGTGGAAAACAGGTGGTACCTGTAATAGAATTTAAAGGTAGTTAGCACTGAATGTAGCCATTTAGGGCAAAGGGATATTGTATCATGAGGTTAATCTACTTGTTAGTTTCAATTAGCAAAAAGACCATTTTTGAAACAGCAACAGAAAACTAATATATTTATCTAATGCCTACCAGAGGA

Function

symbol description
ankrd34c Orthologous to human ANKRD34C (ankyrin repeat domain 34C).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_00849127_00850710.mRNA True 2380 mRNA 0.47 1 848590 850969

Neighbor

gene id symbol gene type direction distance location
CI01000013_00657437_00692874 FRMD5 coding upstream 155716 657437 ~ 692874 (+)
CI01000013_00561825_00581324 NA coding upstream 267014 560823 ~ 581576 (+)
CI01000013_00526975_00537006 SLC28A1 coding upstream 311516 526975 ~ 537074 (+)
CI01000013_00490680_00491519 CH25HL1.1 coding upstream 356960 490616 ~ 491630 (+)
CI01000013_00473761_00488628 NA coding upstream 359758 473138 ~ 488832 (+)
CI01000013_00862608_00869073 IDH2, IDHP, IDH2.S coding downstream 11449 862418 ~ 869073 (+)
CI01000013_00870861_00871425 IDH2 coding downstream 19892 870861 ~ 871522 (+)
CI01000013_01007844_01029438 SEMA4B, SEMA4BA coding downstream 156875 1007844 ~ 1029459 (+)
CI01000013_01036536_01049545 NA coding downstream 185567 1036536 ~ 1049882 (+)
CI01000013_01115756_01164524 NA coding downstream 264787 1115756 ~ 1166617 (+)
G77725 NA non-coding upstream 10546 837697 ~ 838044 (+)
G77724 NA non-coding upstream 11029 837329 ~ 837561 (+)
G77712 NA non-coding upstream 64134 783781 ~ 784456 (+)
G77536 NA non-coding upstream 138083 710116 ~ 710507 (+)
G77528 NA non-coding upstream 141335 706543 ~ 707255 (+)
G77729 NA non-coding downstream 461 851430 ~ 853530 (+)
G77736 NA non-coding downstream 41695 892664 ~ 892941 (+)
G77739 NA non-coding downstream 46781 897750 ~ 897950 (+)
G77747 NA non-coding downstream 57628 908597 ~ 908910 (+)
G77765 NA non-coding downstream 86280 937249 ~ 937457 (+)
G77533 NA other upstream 139041 708833 ~ 709549 (+)
G77695 NA other downstream 95552 946521 ~ 952969 (+)
G79309 NA other downstream 1615796 2466765 ~ 2467171 (+)
G80062 NA other downstream 2733039 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 3213964 4050837 ~ 4065829 (+)
G80845 NA other downstream 3984109 4835078 ~ 4836232 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013454 CABZ01039782.1 coding NC_007129.7 CM002902.2 26124663 ~ 26126258 (-)