XLOC_012825


Basic Information

Item Value
gene id XLOC_012825
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26456681 ~ 26461427 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027119
TTTGAATATTTCCATGGCACCAGTTACAAGGGACTATCAGTGAAACAATTTCTTATACCATTTTCATGGAAGGTTTCCTACAGTACAAAGATGATGACTTTGGAATGAATCTGACTTAACAGGAACTGCATTTGGCACATAAatgctgtatatattttaatattcatatattaAGGAACTAAACAGCGACATTCAGTCCCAAATAGAAAATATGCATATTACAGAAAAACACGCCCACAAACACGCATCTATGCATCAACACATGTGCATGTAAATGCATAGCTGTTGAGGGGACTGGCAAACTGACAGAAGCACAGTACAGTAAATAAAGCGTGATGCCACCAATGATATTTACTGGACCTCTGCGCCATAGTGGATCTTAAAGCTACGGTTCAGGTGAAGTCAGATTTTACCAAATAATTTGGGAGACTGTATGCAAGCATGTAAGGGCCATTCatcctgatgatgatgatgatgaagtttAAAGTCCCTGGTAGAATGATCATCAAAATTAAACCAAACTAATCGAAGAGGCATTTGGAGGACTTCTTGACTTTAATAGCAATGAAGATCAGCAGCTGTAGCCAACAATCCCAGATCttgaacaattaaataaacatctTTGAAGGGTTGATATGACTCATCATTTTATACATgctattgtatacatttttaagcCAGAGATTTACAGTAATACTCCTGAAAACCTACTGTTCATTTGATGTCATGGTAAATGTTCAGCTTCCACTTAACCTTCTCTATTTATGCACTAAGCAGAATGAAATTGATTCTATACAAAGTTCACAGAGGGACCTTGTACAATAACCCAGTTAGTTTCAAGAAATGATGATCCAGTTTAGCCAGTTTAGCTGGCAATTGTCCTTTATAAGACCCTTTCATTCATCACAGTCAAACCTGGCCATTCTGTACTTTACAAGAAAACTATTTAGAGACAAAAGTAAAAAGTAGGAGCCTACAAGGACAGTAGTAGCAATCGCCCTTGAGTCATCGAGCCTGCGCTAGTTTAAATGTGTGCAATGGGATTTCAAGGACGAAGAGAAACATAGGCTTCAGGATCCAAACAAGATGACAAGTGCTTACAATGAGTATAAAATGTAGCAAATTTTGGCAATAATCATCATATAAAATGAGTCGTTTAGTTAAAATCGTGTCCAACTCCAATTAAATGGATTCATTCCAAACTCCTTAGAAAACAGCAGGTAGTCTGACTTGCTACACAACAGCACAAAAACCACCAAAACGATTCATTCCAAAGAATTGGGGTATTGCTTATTGAATGGTGCTGCCATGCAGGACTGACCACTGAAGCTACATAATGCTGTCAATGAGTAAAATCCAGTcttttcccaaacccctcctgCTCAAACCCCGCCAGCCTTTCTGATATTCTGAACCAAATTCCTTCATCAATGGCATGCAAGTGGCCATCAGTTCTATTATTGTACTGCCAAAACAACCATTAAATCAGATTATTCAAAAAATATAAATGGACTTAAGTGCCACAATGCTGTATTATTTGGCACATTGGAGATGTTATAAATGCATGCATGAATACTTCTCATTGTAAGAGACATGCATCACTCCaatgggtctctctctctctctttcccatgTATTAGCAGTTCCAACAGTTTTCGCTACTGTTTCCAATGAACCTTTTTCTCCGGTAATGGTGGAAGACAGTAGTTCTATGAAGTGGTTATGCAAACATTACTATTACACTTCTTAAAACATCTCTGACAGTAATTAACCAAGTTCACTAGCACCAAACAGGCTTCATTGTTTCTGACCTCATACACGACAGCAAGTTGTGATGGGTGGCTCaaaatgtgttctttttaaaTACCAGCACTATTTAAGCCACAAAAATAATGCTATAATGAAGCTTGTTGAATACCAATGAAACCCCGCTTTGTATAATAATGAATTACTACAAGTATCTCAATCCTGCTCTTAATTGAACTGTACACAGAAATCTAGTCTTTGTGAATGCTTTAATTCACATCCTCTATTTTCCAAAATGCAAAAACAATTATATCATAGCAATTTCAAAAGGACAGGCATAAGAGGTGGTGTATGGTAAAAATCCCTGTCCAACTGGCATGCCACTGGAAGAATGGTGTCTTTAAATAAACACTAAAGACATCTTAGACTAGTCAGGACAAGTGTACTGAAGACTTGACCTTTTAGTACATATTGCCAAAAATgagcatatacacacacacacagcctttcAGATAAACTGCGTATTAACTGATTAAGTGTTCAAATGCAGGGCCTTTACCAATATACAAAGCACAGGGACTGTTTTTTCATTGCTGGTTAAGTGACTGAATTGGAAATGGATTGTggatttggtttaaaaaaaactctttcttTTGTCTCCCTTGACAGATATACCACATATTCTAGACCTCATCTGAAACACAGAGCTAAAAAAGCTTGCTATCGCCTACACACTAGTATAGTCCTAAAACGCATCGGACACCCTAAAACTCCACCAAATACAGAACTCAAAGGTAcccattaattttattaaaataatttccagTCTTTCCTCAAGTCTTACTTTCAAAATAACTTGCACATTCTTACCTTACATATAACCCTCTGCTGATCTGATCATTGATGTGGTAAATTATAGCAGCTTTCAGAAAATCATTAAGTATTAAATGACTGGTGATATGAATAATGCATAAACTCAGAAAAGCATTGGTTTCCCACATTCTCATACTTTCCAAACCCACTATACTGTATCAACTTATCTCTTTCCTCCACATTTAATAAGACTTTAACAagtattattgtaaaataaatataaatgaaggcAACGTTCTCGTTGcaacaaaatatttcatatttcctATTTAAGGAACGATAAAATCTTCTCAagtctttgaatttttttctttctttttttctttttttgtaaaaataaaatacctgAAATGACCTGAAATCCAAAAAGTGGaaatcaaaagcaaaataaaaatgacaaaaaaaaagacgaaaaaaattaaaaatggagGGGGAGAAAGAACTTAAAGTGGAAGAGAAGAGGAGCTGTGGGCCTGGTAGTCCACCACCACGTGTCAGCAGGAGTGTCATGAAAGAAGCTGGGCTCATGGGACAGGTCGATGCCCTCCTTCTGTCTCTCTCGTTCTCTCCACGTGTTTAGCATCTTCTCGACCCCAACAAGGGAGGCTTTATGCGCTTTAGTGCCTCAATTTCACTTGTTAATGAGCAGCCCGCCCACCCAGCGGAGCTTGCAGGCAAACCACCGTCTGAGGGGACAAAAGTATTCGTAATGGAACTGCTCAAACTCGGGGGTCTGGCGGATATCACGTAAAAATGCAATGTCAAGATCGGACTCGGTGAGGACGATGAGGAGGAGGAGCAAGACAAAGAGGAGTCCAATGGTCACAAGGAGCAGACGGAGTACACTTAAAACAAACTTATTCACCTGTTCAGCTTCACTGAGCGGGGCCTCCCTGCCAGCGATCTGCATGGGGCCCGCCGCCCTACTGTCTGCGCCAAATTCAGCCACATCGCCCACGGAGGGCGTACCCGCCTCCGACTCCTTCTCCTCCTCTATGCTGCAGGGGGCGCCGTTGATCTGGCGTGAGACTGCCAGCTCCAGGCTGTGCTCTGCTACTGGTGTGGGCAGAACGCTGTCGGAGGGACTGTAGCTCTCATCAGAGATTATCGCTGTCCTGTCACCGGAGTCCGTCATCTGGCTTCGCGAACGTGGCATAAAGGAGTCGCCATGGGACACGGAGCGCACTGGAGTGGAGTGGGCACTGTCCCGCAAGGATTCCAGTCCTGGACAAAAGGAAGGGGAAGATATGAGAGAGAAAAATGGCAGTTTAGTGGTTGTTAAATGTTCTTTCTTTGAGAGTTTGTTAACCTGCTTGAAATGGGTTGGCTATGAAGTGCATTTGCAAGAATTTGCGTGCATGTTTTGACAAAAAAACACATGGTTCATCAGAAAATGTATGATTAGtttgatttaaaatatgtaaaaccgtagacaatttataaaataatgcacGTCAGGACAGATCTTCCATATTGGTACATTCTTATAAGGCAAAACTGAATGTGAGCTTGCAAAAGATTGTAAAAAAGTCTGGCAAAGATGAAAAAGAAGTCTACCCCTTTACTGAAATGCTGAATTATAATATGGTTAATTGAAAATCAGTCAAAATAAAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027119 True 4234 lncRNA 0.39 2 26456681 26461427

Neighbor

gene id symbol gene type direction distance location
XLOC_012824 blm coding upstream 2952 26428829 ~ 26453729 (+)
XLOC_012823 ctsh coding upstream 28156 26422124 ~ 26428525 (+)
XLOC_012822 RASGRF1 coding upstream 38044 26337869 ~ 26418637 (+)
XLOC_012821 znf710a coding upstream 362003 26048128 ~ 26094678 (+)
XLOC_012820 si:ch211-39k3.2 coding upstream 701763 25752592 ~ 25754918 (+)
XLOC_012826 alpk3a coding downstream 258360 26719787 ~ 26728626 (+)
XLOC_012827 alpk3a coding downstream 282322 26743749 ~ 26755230 (+)
XLOC_012828 AL935332.1 coding downstream 286384 26747811 ~ 26747927 (+)
XLOC_012829 slc28a1 coding downstream 367659 26829086 ~ 26850069 (+)
XLOC_012830 ch25hl1.2 coding downstream 434567 26895994 ~ 26896826 (+)
XLOC_012816 NA non-coding upstream 957073 25477794 ~ 25499608 (+)
XLOC_012817 NA non-coding upstream 960070 25492411 ~ 25496611 (+)
XLOC_012812 AL935295.1 non-coding upstream 1715960 24737234 ~ 24740721 (+)
XLOC_012811 CT030043.1 non-coding upstream 1813579 24642987 ~ 24643102 (+)
XLOC_012809 CR847971.1 non-coding upstream 1973396 24477526 ~ 24483285 (+)
XLOC_012832 NA non-coding downstream 536149 26997576 ~ 26998589 (+)
XLOC_012835 BX640463.2 non-coding downstream 734783 27196210 ~ 27196326 (+)
XLOC_012841 BX649600.1 non-coding downstream 1275297 27736724 ~ 27736840 (+)
XLOC_012845 CR769777.2 non-coding downstream 1842464 28303891 ~ 28304317 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G85375 LOC104917831 non-coding NC_053119.1 CM020916.1 16697118 ~ 16702806 (+)
bowfin (Amia calva) AMCG00007770 frmd5,LOC108435336,LOC102299895 coding CM030123.1 CM030123.1 29080151 ~ 29100489 (-)
mexican tetra (Astyanax mexicanus) G85371 NA non-coding NC_035905.1 CM008308.1 32444931 ~ 32469093 (+)