XLOC_012820 (si:ch211-39k3.2)


Basic Information

Item Value
gene id XLOC_012820
gene name si:ch211-39k3.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25752592 ~ 25754918 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025581
GATCTCGCGATGCTGTGGTGGAATCATCCAGAGTGAGTTCAACGCCAGACAGGGAAGGTAGTTTGTGGTTCGGCAATAAAATAGCGGCCCTTTGGGTGAGCTaatctgaaaactggactaactGATCAAAGATGACGAGGGGAAATCAGCGTGAACTTGCTCGCCAAAAGAATGTCAAAAAACACAGTGATATGCAAAAGGGCAAGAGAAATGACGACGGTTTATCTGCTGCTGCCAGGAAGCAGAGAGATGCAGAAATAATGCAACAGAAGCAAAAGAAAGCCCACGAAAAAGGGGATTCTAAAGCCAAACAGTAGATGTCAACAAACCCTCTGGACAGATCCAAGCCATCTTATTTATGAATGCCATAAGTCTATAGTGGGGTTTTGGTCTCAATTCAGAAGCCCCTTTGTTGGTACTTTCCATTGTATTGCACCGGTTTGAGACATGTACACAGTAAAAGTGTAAATTGACCTACTTTTCTTGATCAGTATTTACCATGTAAAGAAACAAGAACAAAATACATATTGGAACCACATACACTTGCATTTTTAAATCTCATTCCTTATTAATatcaacttaaaattgttaaataaatgtcgCTCAAATCAGAGTTTGTTCTAAAGCAGTGTTCTTTGTGCTGCCTAATAAAGACTTCCAGACCTTGGATTTGgatttaaatgtaaaagttttatttgtaaatctgTCACAATAACtacaacatataaataataaaacaaaaacaaaaaa

Function

symbol description
si:ch211-39k3.2 Orthologous to human SERF2 (small EDRK-rich factor 2).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-180 Orthologous to human SERF2 (small EDRK-rich factor 2).

Ensembl:

ensembl_id ENSDARG00000075881

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025581 True 750 mRNA 0.38 3 25752592 25754918

Neighbor

gene id symbol gene type direction distance location
XLOC_012819 fkbp16 coding upstream 6956 25653599 ~ 25745636 (+)
XLOC_012818 pex11a coding upstream 201632 25546227 ~ 25550960 (+)
XLOC_012816 NA coding upstream 252984 25477794 ~ 25499608 (+)
XLOC_012817 NA coding upstream 255981 25492411 ~ 25496611 (+)
XLOC_012815 si:dkeyp-59c12.1 coding upstream 525888 25225524 ~ 25226704 (+)
XLOC_012821 znf710a coding downstream 293210 26048128 ~ 26094678 (+)
XLOC_012822 RASGRF1 coding downstream 582951 26337869 ~ 26418637 (+)
XLOC_012823 ctsh coding downstream 667206 26422124 ~ 26428525 (+)
XLOC_012824 blm coding downstream 673911 26428829 ~ 26453729 (+)
XLOC_012825 NA coding downstream 701763 26456681 ~ 26461427 (+)
XLOC_012812 AL935295.1 non-coding upstream 1011871 24737234 ~ 24740721 (+)
XLOC_012811 CT030043.1 non-coding upstream 1109490 24642987 ~ 24643102 (+)
XLOC_012809 CR847971.1 non-coding upstream 1269307 24477526 ~ 24483285 (+)
XLOC_012828 AL935332.1 non-coding downstream 992893 26747811 ~ 26747927 (+)
XLOC_012832 NA non-coding downstream 1242658 26997576 ~ 26998589 (+)
XLOC_012835 BX640463.2 non-coding downstream 1441292 27196210 ~ 27196326 (+)
XLOC_012841 BX649600.1 non-coding downstream 1981806 27736724 ~ 27736840 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location