Fish Transcriptome and Expression Database

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model fish

XLOC_012828 (AL935332.1)

Basic Information

Item	Value
gene id	XLOC_012828
gene name	AL935332.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007129.7
NCBI id	CM002902.2
chromosome length	51023478
location	26747811 ~ 26747927 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025594
ATTTACAGCCATATCACTCTACAGCAAAAGACTGGTTATTTACTGAAGCtatgcagggctgagcctggtcagtacctggatgggagaccacatgtgaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000108730

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00025594	True	117	rRNA	0.45	1	26747811	26747927

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_012826	alpk3a	coding	upstream	19185	26719787 ~ 26728626 (+)
XLOC_012825	NA	coding	upstream	286384	26456681 ~ 26461427 (+)
XLOC_012824	blm	coding	upstream	294082	26428829 ~ 26453729 (+)
XLOC_012823	ctsh	coding	upstream	319286	26422124 ~ 26428525 (+)
XLOC_012822	RASGRF1	coding	upstream	329174	26337869 ~ 26418637 (+)
XLOC_012829	slc28a1	coding	downstream	81159	26829086 ~ 26850069 (+)
XLOC_012830	ch25hl1.2	coding	downstream	148067	26895994 ~ 26896826 (+)
XLOC_012831	tspan3a	coding	downstream	151389	26899316 ~ 26920132 (+)
XLOC_012832	NA	coding	downstream	249649	26997576 ~ 26998589 (+)
XLOC_012833	pik3c2a	coding	downstream	252923	27000850 ~ 27085828 (+)
XLOC_012816	NA	non-coding	upstream	1248203	25477794 ~ 25499608 (+)
XLOC_012817	NA	non-coding	upstream	1251200	25492411 ~ 25496611 (+)
XLOC_012812	AL935295.1	non-coding	upstream	2007090	24737234 ~ 24740721 (+)
XLOC_012811	CT030043.1	non-coding	upstream	2104709	24642987 ~ 24643102 (+)
XLOC_012835	BX640463.2	non-coding	downstream	448283	27196210 ~ 27196326 (+)
XLOC_012841	BX649600.1	non-coding	downstream	988797	27736724 ~ 27736840 (+)
XLOC_012845	CR769777.2	non-coding	downstream	1555964	28303891 ~ 28304317 (+)
XLOC_012849	CT025546.2	non-coding	downstream	2427166	29175093 ~ 29175208 (+)

Expression

Co-expression Network