XLOC_012831 (tspan3a)


Basic Information

Item Value
gene id XLOC_012831
gene name tspan3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26899316 ~ 26920132 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025599
AGTGGAGTGTTATGGCAGCCAGGAAACGGACAGCCATCTTATAAATCTGCAGCCTTTCTGTTACATTTGCAACCTAAACGGCTTTATTCCATCTTTTAACGATGGGTCAGTGCGGGATTACATCATCTAAGACCGTTTTGGTGTTCCTGAACCTGATATTTTGGGCTGCTGCTGGCATTCTGTGCTATGTCGGGGCATATGTGTTCATCACATATGATGACTATGACCATTTCTTTGAGGACGTGTACACCCTGATCCCAGCTGTCGTCATCATTGCAGTTGGAGCGCTGCTGTTTATTATTGGGCTCATCGGTTGCTGTGCTACTATTCGAGAGAGTCGCTGCGGACTTGCCACGTTTGTCATCATTCTTATGCTGGTATTTGTTACTGAGGTGGTGGTAGTGGTTCTTGGCTATATTTACAGAGCGAAGGTAGAAGATGAGGTCAATCATTCCATCCAGAAAGTGTATAATGAATATAACGGCACCAACACAGATGCTCCCAGCCGCGCTATTGACTATGTGCAAAGACAGCTCCATTGCTGCGGCATCACCAACTTCGCAGACTGGAGGAACACGCGCTGGTTTAAGGAGTCCAAGAACAACAGCGTGCCATTGAGCTGCTGCAAACCTAACGTGAGCAACTGCACTGGCTCCCTCTTGCACCCCGGAGACCTTTATCCTGAGGGATGTGAGGAGCTGGTGGTGAAAAAACTGAAAGAGATCATGATGTACGTCATCTGGGCCGCCCTGACATTTGCTGCAATTCAGATGCTTGGAATGCTGTGTGCTTGTGTGGTTCTGTGCCGCAGAAGCCGAGACCCGGCCTATGAGCTCCTGATGACTGGAGGGACGTATGCATGAAAAAACACCCAGCAGACAGACTCTCTtctctatctcacacacacacacacacacacacacacacacacacacacacacacacacacactgggctcAGGGTTCTGTCGGTGTGAGGTGGCACACTGGATATGCCCGAATTAtctctctttctaaacaccttaCACAGGGTTTGCTCACACGATGCACTGGTGATGGGTGAAACGAAGCGcatcctatttatttattcagtatatgTCACTGAAAATGACTGCGTTTTAATTAAAACctttgttttttctctctctcaaagGCGTCGAGCCAGACTGCGAAATGGCGAGTTTATAATCCTGTTGAGAAGACTTTAACTTGAATCGTTAACTTTTTTCCTCTATTATATGGAGTTGAAGATGCTGTTATGGTATGAATAATATGTGGAATGTATGCTTTCCTCATTTGGTTAGTTTTGCACTATGTGTATGGTTTAGTTCTATATTACCTTAACAAACAGAAAGCTGGTGAAACAGCTGAAATGCTTTGATACAAGAGGATTGGCTGTCTCTCAGATGTCACCCATCACCAGTCTGGCGCAGCGGTAGTGTGAGAGACAGATCTAGATTGACCATGCAAGGCATTGTGGGTACAGTCgtatggctgtttgttttgaaatgaagGTCACATTGGTTTATGTGCGAATGGGTTTGGGGAGGGAGGGCTGGCGGCTTTACATGCACTACCTACCATTCACCCAATCCTTATATTCTTTTCctcctctttttttccccctttgctTACAGTGTGAACATTACTAGTCTAGTAATCTATAGTTAGTTTGGATAACACGTAGGTATGTAGAACAGGGTCAACagtgtattattttaaaatgaatgtacAGAGGGAGGGGGAAAATGGTGAAATAAGCTTGTCATttcaatctttaaaataaatgtttcataagTTGACA

Function

symbol description
tspan3a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including eye; fin; gonad; heart; and integument. Orthologous to human TSPAN3 (tetraspanin 3).

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7787 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including eye; fin; gonad; heart; and integument. Orthologous to human TSPAN3 (tetraspanin 3).

Ensembl:

ensembl_id ENSDARG00000034753

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025599 True 1803 mRNA 0.45 7 26899316 26920132

Neighbor

gene id symbol gene type direction distance location
XLOC_012830 ch25hl1.2 coding upstream 2490 26895994 ~ 26896826 (+)
XLOC_012829 slc28a1 coding upstream 49247 26829086 ~ 26850069 (+)
XLOC_012827 alpk3a coding upstream 144086 26743749 ~ 26755230 (+)
XLOC_012828 AL935332.1 coding upstream 151389 26747811 ~ 26747927 (+)
XLOC_012826 alpk3a coding upstream 170690 26719787 ~ 26728626 (+)
XLOC_012832 NA coding downstream 77444 26997576 ~ 26998589 (+)
XLOC_012833 pik3c2a coding downstream 80718 27000850 ~ 27085828 (+)
XLOC_012834 plekha7a coding downstream 180964 27101096 ~ 27307129 (+)
XLOC_012835 BX640463.2 coding downstream 276078 27196210 ~ 27196326 (+)
XLOC_012836 cd81b coding downstream 398457 27318589 ~ 27336157 (+)
XLOC_012825 NA non-coding upstream 437889 26456681 ~ 26461427 (+)
XLOC_012816 NA non-coding upstream 1399708 25477794 ~ 25499608 (+)
XLOC_012817 NA non-coding upstream 1402705 25492411 ~ 25496611 (+)
XLOC_012812 AL935295.1 non-coding upstream 2158595 24737234 ~ 24740721 (+)
XLOC_012841 BX649600.1 non-coding downstream 816592 27736724 ~ 27736840 (+)
XLOC_012845 CR769777.2 non-coding downstream 1383759 28303891 ~ 28304317 (+)
XLOC_012849 CT025546.2 non-coding downstream 2254961 29175093 ~ 29175208 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_00464450_00466620 TSPAN3, TSPAN3A coding CI01000013 null 464349 ~ 466620 (-)