XLOC_012836 (cd81b)


Basic Information

Item Value
gene id XLOC_012836
gene name cd81b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 27318589 ~ 27336157 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025610
ACATCCCCTTATATCCATCTTTGGAGCTGAGCCTCGATCCTCTTCCTCCAGACCAGCATCACTCACCACATCAAACCATGGCTGTAACAGGCTGCTCTCAGTGCATTAAATATATGCTCTTCTTCTTAAACTTCATTTTCTGGCTGGCTGGTGGTGTGATTTTGGGTGTAGCTTTATGGCTTCGTCACGACAGTCAAACCAGCAACCTCCTCATGCTCCAGTTTGAAGGAAATCAAGCACCGGGAACTTTTTATATCAGTGTGTATGTCCTCATAGCGATCGGTGCCATCATGATGTTTGTGGGTTTCCTCGGCTGTTATGGAGCTATTCAGGAATCTCAGTGTCTTTTAGGAACGTTTTTCACATGTTTAGTGATCCTCTTCGCCTGTGAGGTGGCTGCAGGAATATGGGGCTTTATAAACAGAGACACAATCTCCACTGAGCTTATTAATTTCTATGACGCTGCATACATTAAAGCTGTAGATCCAGTGGATACGACATCCAGACAGACAGCATCTAAAGTTCTGGAGGTCTTCCATGACAATCTTGATTGCTGTGGTAAAGGGGATGATAATGACCTTTTCAAAGTTGTCCAGACCTCTCTGTGTCCCAAGAAGACTTTTCCACTTGATCCACTCATCTCTCAGAGCTGCCACGTGAAGCTAAGAAACCTGTTCTCTGAGAAGCTTCATGTGATTGGACTGGCTGCTCTAGTTATTGCTGTCATTATGGTTTTTGAGATGATCTTCACCATGGTCCTGTGCTGTGCGATCCGCAATGCTCCTGCGTATTGAGTTGGTGAATGATGACCAGGCTAATAAATGATGtttgatgtatttttttctaGTGGTGGTCAAAAGGCCATTTCACTTCTGCATTGCCTCTCTCGTTTTAAGTTCAGGTGTCCAAACGCTGAACATTGATCCCTGTGTTTGTAGAGTGGACTGTCATTGTGAATGTGCCAGAATACACACCAAGGGCTTTTAAAAATTAACCAATAGCCAACATCAGAGAGGAGGGATAATGTGATTGATGAATAGCATTGCGTTTGTGttgtattgttttatgtttatttaatcattttattaaatctTTACTGGTTTACTTTAATTATCTGTTCTTCAACTTTTAGTAataatttttgtgtgtttgtttatttgtaaagtAAATCAATGTAATGTTAATAGAGATGGATTTCAGCAGCCCCTAATGATGGTGTCATAAGAATCTAAACCCATATGAAGCAAATGAAGTAATACATAACCTGTTGAGTCcctgctgtattttttattttgtagaacATTGACTTGATTTCTAATAAaccttttaataaattttaattaataaataaaggtttaataaAGA

Function

symbol description
cd81b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in cerebellum; cleithrum; floor plate; and hindbrain. Human ortholog(s) of this gene implicated in common variable immunodeficiency. Orthologous to human CD81 (CD81 molecule).

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040808-52 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in cerebellum; cleithrum; floor plate; and hindbrain. Human ortholog(s) of this gene implicated in common variable immunodeficiency. Orthologous to human CD81 (CD81 molecule).

Ensembl:

ensembl_id ENSDARG00000022437

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025610 True 1365 mRNA 0.39 8 27318589 27336157

Neighbor

gene id symbol gene type direction distance location
XLOC_012834 plekha7a coding upstream 11460 27101096 ~ 27307129 (+)
XLOC_012835 BX640463.2 coding upstream 122263 27196210 ~ 27196326 (+)
XLOC_012833 pik3c2a coding upstream 232761 27000850 ~ 27085828 (+)
XLOC_012832 NA coding upstream 320000 26997576 ~ 26998589 (+)
XLOC_012831 tspan3a coding upstream 398457 26899316 ~ 26920132 (+)
XLOC_012837 si:dkey-29p10.4 coding downstream 1837 27337994 ~ 27358871 (+)
XLOC_012838 tp53i11b coding downstream 103523 27439680 ~ 27570030 (+)
XLOC_012839 cd82b coding downstream 235291 27571448 ~ 27626391 (+)
XLOC_012840 tspan18b coding downstream 396128 27732285 ~ 27813164 (+)
XLOC_012841 BX649600.1 coding downstream 400567 27736724 ~ 27736840 (+)
XLOC_012828 AL935332.1 non-coding upstream 570662 26747811 ~ 26747927 (+)
XLOC_012825 NA non-coding upstream 857162 26456681 ~ 26461427 (+)
XLOC_012816 NA non-coding upstream 1818981 25477794 ~ 25499608 (+)
XLOC_012845 CR769777.2 non-coding downstream 967734 28303891 ~ 28304317 (+)
XLOC_012849 CT025546.2 non-coding downstream 1838936 29175093 ~ 29175208 (+)
XLOC_012854 NA non-coding downstream 2793614 30129771 ~ 30131831 (+)
XLOC_012863 NA non-coding downstream 3737086 31073243 ~ 31075619 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000180_01423287_01433910 NA coding CI01000180 null 1423287 ~ 1434085 (+)