XLOC_012839 (cd82b)


Basic Information

Item Value
gene id XLOC_012839
gene name cd82b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 27571448 ~ 27626391 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025617
GGGTTAATGTGGTTTCTCGTGAGCTGCTCTCTTTTTGTTCAGACTGTTAGTAGCACAACAGCGAACTAACTGACAGCTGCTCCACGGATCTTCGCTGCGACTTGACACAAAACAGAGCTGCAATCATGGGGAAAGGATGCATCGCCGCCACCAAATACTTCCTGTTCTTGTTCAACCTCCTCTTCTTTATTCTTGGAGCTGTAATCAtgggctttggactgtgggtcaGGCTGGATAGTCAGAGTTTCCTCACGGTTTTGCAAGAGTCTTCTACATCGCTGAAAGTTGGAGCCTACATCTTAATTGGGATTGGATCTCTGTCTATGCTCATGGGATTCCTGGGTTGCATTGGTGCCATTTATGAGATCCGCTGCCTGCTTGGATTGTATTTCACATGCCTGCTCCTCATCCTCATCGCTCAGGTCACAGCCGCTGTTCTCATCTACTTCCAGAGAGACCTActgaaaGGAGAGACGTACAACATTGTGAACAAAATTCTGGTGAACTACACTGGTTCTAACAATACATCAGAGGATGCCTGGGATTACATTCAGAGAACGATGAAGTGCTGTGGATGGAGTGGACAGTCTGACTGGAAAGAGAATGTGATGATAAAGAACAACTCCAAGATTCTGTATCCATGTTCCTGCAGAAATGAATCCATCAGTGGCTCAGATAAGCAAGAAAAAGGCTTTTGTGAGGGTTTGTCCCCTCAATGGCCTGTCTTCACTAAGGGCTGTATATCTAGTTTGGAGGACTGGATCCTAAGGAACTGTGGAGTTATTCTGGGTGTCTGTGTTGGAATAGCAGTGATCGAGCTTTTAGGGATGATCCTGTCCATGTGCCTCTGCAAGAGTGTCCAACAAGAGGATTACACCAAAGTCCCCAAATACTGAGCGCAAACCCCCATCACAGCACAAAACAGCAGTGTTACAGCCTCTCCACACCAGCACAGCAACTGGAACAAAGCGGACCAGAccagacacacaaacactttaATATCCCATCAAACAATCCAGTCATCACCCTGTCCAACATCAACATAAAGagacactccactttttttgcaAATAGGCTTATTTTTTAACTCCACCAGAGTTAAAGATTGACATCCATTCAGTCGATTTCTGGGTTTggtaggagcacttttagcttagcttagcttagcataaatcattaaatcagattagaccattagcatcttgctcaaattCAAAAAAAGAGTTcagataattttcttatttaaagcttggcTCTTATGTAGTAAATTACTTAGctagggactattttcaggcacttTATAATATCATAGTGCCTGCAGCAGCCATGGTAGGGTggcaaagtttcttgattattacgtcATAATCGGTATGGTAAAGTACTATAGTAAAGGTATAGTTTCTAGACATATCAACCTAAAAATAGAAACTTTACATTTTCCGTACGCTTTTGTAACTACAGAAAACTCCAGCTTGAAATCGtacaattatttaaactttttattgagtggaatgctaatggtctaatccgaatcaatgatttatgctaagctaagctaaaagtgctgccaCCAGACTCAGGgttcagctgaatggattcaaaaatgataCAACTTGGCTGTTTAACTCTAGAAGGTGCTGTAAAATTAGCTGATTTCCAAACAAAAAAGTGGGGTGTTCCTTTAaatcgtaaataaataaattgatcttTTTTAAGTGCTTTTGGGAGTCTTTATAGCATGATGTATGATTATTATGGCTGTACTTAACTGTTGCGTTTACCATTTTCATTGTTAGTTGAATTTAAGAGAGCACTTTAGTGAATAGAGAGTTTGATAAGGGAgctacttttaaaatatttctttttattgaaaaaacaaGGGGAAACTTCACACTTTTTTTATTgaccctactctttttttttttatatatatatatatatatgttttatatgaaAATTGTATACTTTCAATTTGGTTATGTATATATCAATATGATTGATTGATATACTTCAGTCAGGGTTGTTCTTACTGAATAACTACATTCCTGTTATAGCAGCACTTAATGATTGCTTTCTGTGTGTGTTATTAGTCAGGGTGGAGCAGGTGTGGTTTGGGTTGGGTAAGGATGCCTGCGGTTGGCGAATGCTAGGGCAGAGGAGGAGACTAAGGCCCAGCGTAGCGTTTCTTGTGGTTTACATGTGAGTCAGGGTGTGTATCTGGATTTAGGTTGGGTTCGTATCCCACAATTCCTTCTGCTGGGTGAAACAGCTGTTCAAATGTGTTCAGAACAGGCTTTAGATACACATCTTGCTGACTAGCTCCAGCTGTAGCCTGAGCGAAATCCTCACGTCTGACATCTGTCTTCCTGTTTCTGACTCATTTTAGCCCAACCAAAGTAAGTCTGAAGTCGTGTGAGGCTTTTAAGTATATTTAcgtttcttctttttaaatgttttggagCCTTCGGTTTTATTATTTCATGTGAAGCTGATGTAAATGTTGTATGGCTGTTGTCAGTGGTGTTTATTCATAACAAAAGCTTCATGTGAGGCGGGAGGAGAAAAGAACAATCTAGATGCTGTCTGTAATGCATTTTCAAACACTTTATAGCTTTCTGACTAGGAAATGTGTAACGTTTCATTTCTCAACTGCCAGATGTTAAAGCGATTGACCTAGAAGATATTTTTAGTTCATGATTTTTCACATTTCAAGACTGAATAATACCTCAGTCTCCTTTTGTATTTTCTTAAGATGTTGTCTCTTTAAGTCTAGTTTAGATATCGAAAGatccttttattttaaatctgaaaatgtaccaaTATTGGGAAGATTTTGTATTTCTGAGGTAAAGTGAAGATGAAGggctttttataattttttttgtacatttcttaAGCAAGATTTTTTGTTGAACTGGGAAGCCATGTCCATGTAGTGAGTTTTACCAGCTGTAGTACAAATATATGCAATAGTTATGAGTTGAATTAAAAGAAAACGTGGACACCA
>TCONS_00025618
AGACTGTTAGTAGCACAACAGCGAACTAACTGACAGCTGCTCCACGGATCTTCGCTGCGACTTGACACAAAACAGAGCTGCAATCATGGGGAAAGGATGCATCGCCGCCACCAAATACTTCCTGTTCTTGTTCAACCTCCTCTTCTTTATTCTTGGAGCTGTAATCAtgggctttggactgtgggtcaGGCTGGATAGTCAGAGTTTCCTCACGGTTTTGCAAGAGTCTTCTACATCGCTGAAAGTTGGAGCCTACATCTTAATTGGGATTGGATCTCTGTCTATGCTCATGGGATTCCTGGGTTGCATTGGTGCCATTTATGAGATCCGCTGCCTGCTTGGATTGTATTTCACATGCCTGCTCCTCATCCTCATCGCTCAGGTCACAGCCGCTGTTCTCATCTACTTCCAGAGAGACCTAGTAGGTTACACTACAGTGTTCaagtattatttatatactaatacaatatttattcatatttagaattaacttttttttattatttatttttgacttattttacttgtgtttgtttttccttttacaTGTAGTTTAAGTAATTagcttttttctatttaatttataatttttttacactattttagtaatatttatagGGATGTCCTGATGTCAGGACATGATGGATgtccaagtcatttgattttgagtatctactgatacccttctataatacataaaaaagaataaagatgaccgaagaaacagatccaggatgttccttattgtttatttaa
>TCONS_00025619
ATCATGGGGAAAGGATGCATCGCCGCCACCAAATACTTCCTGTTCTTGTTCAACCTCCTCTTCTTTATTCTTGGAGCTGTAATCAtgggctttggactgtgggtcaGGCTGGATAGTCAGAGTTTCCTCACGGTTTTGCAAGAGTCTTCTACATCGCTGAAAGTTGGAGCCTACATCTTAATTGGGATTGGATCTCTGTCTATGCTCATGGGATTCCTGGGTTGCATTGGTGCCATTTATGAGATCCGCTGCCTGCTTGGATTGTATTTCACATGCCTGCTCCTCATCCTCATCGCTCAGGTCACAGCCGCTGTTCTCATCTACTTCCAGAGAGACCTActgaaaGGAGAGACGTACAACATTGTGAACAAAATTCTGGTGAACTACACTGGTTCTAACAATACATCAGAGGATGCCTGGGATTACATTCAGAGAACGATGAAGTGCTGTGGATGGAGTGGACAGTCTGACTGGAAAGAGAATGTGATGATAAAGAACAACTCCAAGATTCTGTATCCATGTTCCTGCAGAAATGAATCCATCAGTGGCTCAGATAAGCAAGAAAAAGGCTTTTGTGAGGGTTTGTCCCCTCAATGGCCTGTCTTCACTAAGGGCTGTATATCTAGTTTGGAGGACTGGATCCTAAGGAACTGTGGAGTTATTCTGGGTGTCTGTGTTGGAATAGCAGTGATCGAGCTTTTAGGGATGATCCTGTCCATGTGCCTCTGCAAGAGTGTCCAACAAGAGGATTACACCAAAGTCCCCAAATACTGA

Function

symbol description
cd82b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human CD82 (CD82 molecule).

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2857 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human CD82 (CD82 molecule).

Ensembl:

ensembl_id ENSDARG00000026070

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025617 False 3007 mRNA 0.39 9 27571448 27626391
TCONS_00025618 False 756 lncRNA 0.38 5 27571488 27614703
TCONS_00025619 True 774 mRNA 0.46 8 27598755 27624280

Neighbor

gene id symbol gene type direction distance location
XLOC_012838 tp53i11b coding upstream 1418 27439680 ~ 27570030 (+)
XLOC_012837 si:dkey-29p10.4 coding upstream 212577 27337994 ~ 27358871 (+)
XLOC_012836 cd81b coding upstream 235291 27318589 ~ 27336157 (+)
XLOC_012834 plekha7a coding upstream 264319 27101096 ~ 27307129 (+)
XLOC_012835 BX640463.2 coding upstream 375122 27196210 ~ 27196326 (+)
XLOC_012840 tspan18b coding downstream 105894 27732285 ~ 27813164 (+)
XLOC_012841 BX649600.1 coding downstream 110333 27736724 ~ 27736840 (+)
XLOC_012842 si:ch211-222m18.4 coding downstream 195465 27821856 ~ 27822787 (+)
XLOC_012843 hipk3b coding downstream 278124 27904515 ~ 27993797 (+)
XLOC_012844 kiaa1549lb coding downstream 476229 28102620 ~ 28156256 (+)
XLOC_012832 NA non-coding upstream 572859 26997576 ~ 26998589 (+)
XLOC_012828 AL935332.1 non-coding upstream 823521 26747811 ~ 26747927 (+)
XLOC_012825 NA non-coding upstream 1110021 26456681 ~ 26461427 (+)
XLOC_012817 NA non-coding upstream 2074837 25492411 ~ 25496611 (+)
XLOC_012845 CR769777.2 non-coding downstream 677500 28303891 ~ 28304317 (+)
XLOC_012849 CT025546.2 non-coding downstream 1548702 29175093 ~ 29175208 (+)
XLOC_012854 NA non-coding downstream 2503380 30129771 ~ 30131831 (+)
XLOC_012863 NA non-coding downstream 3446852 31073243 ~ 31075619 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000180_01560354_01568670 NA coding CI01000180 null 1560091 ~ 1568772 (+)
bowfin (Amia calva) AMCG00007386 NA coding CM030123.1 CM030123.1 17150172 ~ 17168177 (-)