XLOC_012837 (si:dkey-29p10.4)


Basic Information

Item Value
gene id XLOC_012837
gene name si:dkey-29p10.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 27337994 ~ 27358871 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025611
GTTTCGTTTCTTCGATCGCGTGTTATTCGGCTGTAAATAAAGCTTTTAACGAAGATGGGAGCAGCTAATGAGAAAGCTCTGAAATGCCCTCTATGTCATGAGGATTGTCGGGATCAGGTGACGCTGGGCTGCGGACATAGCTTCTGTCAGTCGTGTATCAAAGAGTTGTGGAGCGGCTCCCGCACTGGACCTTATTATTGTCCTGAGTGTCGATACGAGTACCAGCAGCTTCCGGACTACACGGACAGAGCGTCCACATCCACAGCCACACCGATAACACATTGGCCACTCGGAAAGAAGCTCTATAAGCAACACTCAAAGAAATGGCATAAGAAAAGGAAGTTCTTCTCAGCCTTTCCAGGTGATGGATTCAGACTAGGAGTCAGCACAGGATCGTTCAACTTCAATGATGTAATCAACATTGCTGACTCCGATGAAGACACATCAGCGATACCAAAGAAAAGAAGAGCCACAGCAGACGAACACCCATCTGAAAGCCAGTCTTCATCAGTGCTCAGGAGATCCACCTCTACCAGTGACACATCCACACAATGCACACCACCCGAAATAAGTGAGACCACCTCTCCTCAAGCAGAGTCATCTCCAGACAGGACGAGTTCCTCTCAGCAAGTTCCTCTGGCATCCCACAATGACATGGACTCACCCAGGGAAAGCAACACACCACCAACTACCTCTTCTAAAGCCAGTGAGACGCCAACATTCAATGCAAATTCCGATTCTCCTGGAAGACAAGAAAGTCACAACACGTTAAATCTCGAAGATGGTCTAGGTGTCTCTGCAGTGTCGCCAGAGAGACTATCAAGAAACAGCTCTGTTCCCTGCCATTACTGTCCCAGTTCAGAACAGAAGGTGGCAGTAAAGACCTGCCTGGTTTGTGGGGCATCCATGTGCTCAGAGCATCTGCGGGATCACCTGGAGAAGCCGGTATTCAAGAGCCACCCGCTGGTGAACGCTGTGGAGGATGTGTCTCTCTGGAGGTGCCAGGAGCACCAGGAGATGAACCGGATCTACTGTCGGTCGTgcgctgtgtgtgtttgcactgtgTGTTCGCTGGTTGGGCTGCACAAGGGCCACGAGTGTATCAGCATCCGAGAGGCAGAGCAGCAGCTCAGGGGCTCGCTGAAGGATGAGATGCAGAAACTCCAAACAACAGAAAAGTCCATTCAGGAAAAGGTGTCTGAGCTCAGTGAGAAAAAACATTGTGTTCAGTCAGAGCTTGAAGAAGTGCGGGCGGCTGTTTTGCAGCAGTATCATGCCATGCAGGAGGCTCTGGAGCAAGAGCAGGAGCAGGCGTTACTCTGTGTGTCCCAAGAGGAGAACAGAGTGCTGGGAAGCATTGAAAAGCAGCTGCACACTTTACAGGGTGCCTTGATGTCAAGCCAGAGCATATTAAACACCCTGCAGGGAATGACCAATAATGAAGGAGCATCACAGTACCAGGACCAGGCCTTCATCATGGAATACAGCAAGATAGCAGGACAACTGACTGGACTTTCTGATCCAGTGCAAAACTTCAGAGCTCCTCAGGAGATAAATCAAGAGCGTCTGGAGTGTCTTCATGAGTGGACCGAGAGGAGACTGGAGACTGTGCTCATTTCACTGCCTCACAGAGACCCTTTCAGACTGCTATATGGGATAAGCCCAACTCTAGATCCTGATACAGTCCATCCAAAGCTGCTGCTGTCCAACGAGAATAGGATGGTACAGTACAGCGAGACCCAGCAGGACTACAGCGAACATGAGGCACGATTCAACATCTTCCCTCAGGTTCTGGGCTCTGATGCCATAGAAAGGGGCTGCTGTTATTGGGAAGTGGAGGTTTCTCTTGATGAGGGTCGCTGGAAGGTGGGCGCCTGTGATGGGCGGATTGGCAGAAAGGGGCAAAAAGACGTCTGCCGTATTGGCTTCTACCCTAATTCTTGGTGTTTAATTTATGAGAAGGGGAAGGTGGAAGCTCTACATGATAAAGTGGCTTCACCTGTTTGTGCGACTGATCTCCAGAAAGTCGGGGTGTTGCTGAATTTAAATGAAGGCAGATTGTCGTTTTATAGTGTGGCCAGAGATGGTGCTCTTTCTTTGCTCTATAGCTTTGAGCACACGTTTAGTGAGCCGCTGTATCCTGCGCTGGCTGTTTCTAAAACTCAAGTTAGTATCTGCGACGTGTTTAGCAAGAGTGTGGCAGAATAG

Function

symbol description
si:dkey-29p10.4 Predicted to enable zinc ion binding activity.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050420-117 Predicted to enable zinc ion binding activity.

Ensembl:

ensembl_id ENSDARG00000017173

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025611 True 2208 mRNA 0.50 7 27337994 27358871

Neighbor

gene id symbol gene type direction distance location
XLOC_012836 cd81b coding upstream 1837 27318589 ~ 27336157 (+)
XLOC_012834 plekha7a coding upstream 30865 27101096 ~ 27307129 (+)
XLOC_012835 BX640463.2 coding upstream 141668 27196210 ~ 27196326 (+)
XLOC_012833 pik3c2a coding upstream 252166 27000850 ~ 27085828 (+)
XLOC_012832 NA coding upstream 339405 26997576 ~ 26998589 (+)
XLOC_012838 tp53i11b coding downstream 80809 27439680 ~ 27570030 (+)
XLOC_012839 cd82b coding downstream 212577 27571448 ~ 27626391 (+)
XLOC_012840 tspan18b coding downstream 373414 27732285 ~ 27813164 (+)
XLOC_012841 BX649600.1 coding downstream 377853 27736724 ~ 27736840 (+)
XLOC_012842 si:ch211-222m18.4 coding downstream 462985 27821856 ~ 27822787 (+)
XLOC_012828 AL935332.1 non-coding upstream 590067 26747811 ~ 26747927 (+)
XLOC_012825 NA non-coding upstream 876567 26456681 ~ 26461427 (+)
XLOC_012817 NA non-coding upstream 1841383 25492411 ~ 25496611 (+)
XLOC_012845 CR769777.2 non-coding downstream 945020 28303891 ~ 28304317 (+)
XLOC_012849 CT025546.2 non-coding downstream 1816222 29175093 ~ 29175208 (+)
XLOC_012854 NA non-coding downstream 2770900 30129771 ~ 30131831 (+)
XLOC_012863 NA non-coding downstream 3714372 31073243 ~ 31075619 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000180_01434810_01440307 NA coding CI01000180 null 1434312 ~ 1440307 (+)