XLOC_012816


Basic Information

Item Value
gene id XLOC_012816
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25477794 ~ 25499608 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026901
GGATGGGACAGCGTGAGTTactagtgtatatacagtataacagaAGAAAAATGGCAAAAACTGTTAGTCAGCTTTTACGTGAAGCAGCTGCTGCATTGGTACAGCAAGAGGAACAGGGGACACAGGAGAACCAAACGTCAAACATCCGTCCCGCAGCAGGAGTCGCGGGCTTCCTTGATGGGCAGAGAAACTGCAGCTCTGGACATTCTCTGGGAGGTGGTGATATGCTGTCTAACTGTGTACCTGTCTGAGAACCTTGAACATCTGATTACACATTACCTGgacACAAGTGGGGAAACGGACCAGCTGGATATTGGAAAGCACATACCAAAAACTGTGATcatacgcacacatacactatacaaacaatttagcttacccaatttacctataccacatttctttggacttgtgggggaaaccggagcacccagaggaaacccacatcaacacggggagaacatgcaaactccacacagaaacaccaactgacccagccagggctcgaaccaacaaccttcttgctgtgaggcgattgtgctggGTGTTTGACAAGCACAGCTTTGAACACTACTTTTAAGAATACTCTTGAAACAGTTTTTGAAGTATTGTTTCTATTAAAGCAGTACATTTGTAAAAGAAATTGCATTTTTTGAACATCTAAAAATGTTTTCAGGAAATGTTTTAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026901 True 689 lncRNA 0.44 3 25477794 25499608

Neighbor

gene id symbol gene type direction distance location
XLOC_012815 si:dkeyp-59c12.1 coding upstream 251090 25225524 ~ 25226704 (+)
XLOC_012814 fam174b coding upstream 468128 25003207 ~ 25009666 (+)
XLOC_012813 rgma coding upstream 545465 24919614 ~ 24932329 (+)
XLOC_012812 AL935295.1 coding upstream 737073 24737234 ~ 24740721 (+)
XLOC_012811 CT030043.1 coding upstream 834692 24642987 ~ 24643102 (+)
XLOC_012818 pex11a coding downstream 46619 25546227 ~ 25550960 (+)
XLOC_012819 fkbp16 coding downstream 153991 25653599 ~ 25745636 (+)
XLOC_012820 si:ch211-39k3.2 coding downstream 252984 25752592 ~ 25754918 (+)
XLOC_012821 znf710a coding downstream 548520 26048128 ~ 26094678 (+)
XLOC_012822 RASGRF1 coding downstream 838261 26337869 ~ 26418637 (+)
XLOC_012809 CR847971.1 non-coding upstream 994509 24477526 ~ 24483285 (+)
XLOC_012808 NA non-coding upstream 1588752 23876440 ~ 23889042 (+)
XLOC_012807 NA non-coding upstream 1649736 23811384 ~ 23828058 (+)
XLOC_012825 NA non-coding downstream 957073 26456681 ~ 26461427 (+)
XLOC_012828 AL935332.1 non-coding downstream 1248203 26747811 ~ 26747927 (+)
XLOC_012832 NA non-coding downstream 1497968 26997576 ~ 26998589 (+)
XLOC_012835 BX640463.2 non-coding downstream 1696602 27196210 ~ 27196326 (+)
XLOC_012841 BX649600.1 non-coding downstream 2237116 27736724 ~ 27736840 (+)

Expression


Co-expression Network