XLOC_012815 (si:dkeyp-59c12.1)


Basic Information

Item Value
gene id XLOC_012815
gene name si:dkeyp-59c12.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25225524 ~ 25226704 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025578
ATGACTGGACTAAACGGACAGAGAATGGACGCAAACGTCGTTGTTCTAGGCACTGACAATGTTGGTAAATCTGCTCTCATTGTCCGGTTCCTGACTCGCAGATTTATTGGGGAATATGGTGATATCGAATCGTTTTACACTCACAATATTGTTGTGGATGGACGAGAGCAAACTCTGAATATATGGGATGCGCCGTATTCACAGCAGGACCCATCCTTCGAGACTCTGCTGTGTGAGAAAAGACTTCAGTGGGCGGACGGTTTGGTGCTGGTCTACAGCATTTGTGACAGAGCCAGTTTCAACACTGTCTCCAGACTCGTTCATACAATAAAAACCACCAAAGACTTTCTGGGCTTTGAGAAGATGCCCATAGTTATAGTAGGAAACAAGAGAGACCTGCACCATCGCCGTACAGTGCTTAGTGAGGAGGGCcggctgcttgcactctcagcggATTGTCAGTTTTATGAGGTCTCGGCTGCTGAGAACTACCACAGCGTTCTCATGGTTTTCCATGGGCTGGTGGATCGTATCAGAGAATCCAGAGTGTCTGTGAAGAAGTTAGCAGGCATTAAGGGAATTGTGAAGAGCATGTCTGCAGTGTTTGCCCGCAGGCGAACAGATTCACTGTGA

Function

symbol description
si:dkeyp-59c12.1 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Orthologous to human RERGL (RERG like).

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-167 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Orthologous to human RERGL (RERG like).

Ensembl:

ensembl_id ENSDARG00000038112

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025578 True 633 mRNA 0.48 4 25225524 25226704

Neighbor

gene id symbol gene type direction distance location
XLOC_012814 fam174b coding upstream 215858 25003207 ~ 25009666 (+)
XLOC_012813 rgma coding upstream 293195 24919614 ~ 24932329 (+)
XLOC_012812 AL935295.1 coding upstream 484803 24737234 ~ 24740721 (+)
XLOC_012811 CT030043.1 coding upstream 582422 24642987 ~ 24643102 (+)
XLOC_012810 lysmd4 coding upstream 652851 24562188 ~ 24572673 (+)
XLOC_012816 NA coding downstream 251090 25477794 ~ 25499608 (+)
XLOC_012817 NA coding downstream 265707 25492411 ~ 25496611 (+)
XLOC_012818 pex11a coding downstream 319523 25546227 ~ 25550960 (+)
XLOC_012819 fkbp16 coding downstream 426895 25653599 ~ 25745636 (+)
XLOC_012820 si:ch211-39k3.2 coding downstream 525888 25752592 ~ 25754918 (+)
XLOC_012809 CR847971.1 non-coding upstream 742239 24477526 ~ 24483285 (+)
XLOC_012808 NA non-coding upstream 1336482 23876440 ~ 23889042 (+)
XLOC_012807 NA non-coding upstream 1397466 23811384 ~ 23828058 (+)
XLOC_012825 NA non-coding downstream 1229977 26456681 ~ 26461427 (+)
XLOC_012828 AL935332.1 non-coding downstream 1521107 26747811 ~ 26747927 (+)
XLOC_012832 NA non-coding downstream 1770872 26997576 ~ 26998589 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_01297354_01298578 NA coding CI01000013 null 1297329 ~ 1298578 (-)