XLOC_012818 (pex11a)


Basic Information

Item Value
gene id XLOC_012818
gene name pex11a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25546227 ~ 25550960 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025579
ATGGAAACTTTCATCAGCTTCACGAACCAAAGTCAAGGAAGGGATCGCATTTTCAGGGCAACACAATATGCATGTGCTTTGGCGAAATACCTTCTGAGAAATGAAGCGAAAAGAAAAGAGCTGGCGAAAAAGCTGCAGTTGCTGGAGTCTAATATGAGCTCGGGGCGAAAGCTATTTAGGCTTGGTAACACTGTAAACTCAGTCCAAGCTGCCAAGAGCACTCTTCATATTTCTGACCCTGTCCTGCGCTTCTGCCTTACTGTGGCCAACCTCAACCGTGCCTTATACTTCATCTGTGACAACATCCTCTGGGCAAGAAGCATTGGCCTAATCCGAGATATCGACAAGGAGCGCTGGAGCTTAAACTCCTCTCGCTTCTATTTCCTGTCTTTGGTCATGAATCTGACCAGAGACGTCTATGCGATCATCCAGCTAATGGTCCAGAAGTCTCGGGACAGACGTTACCAGCAGAAAGCCGACCAACACCTTAATGAAAGTCCGGATGTGGCTTGTGTCATTGTGCCTCAGCTCGACGCGTTTCTCTTTCTTCTCATGGAGAGCCTCAGAAGTCAGCCGTCTGTGGCGCTTGATACGCTTAAAAATGTTTGTGACCTTTTCATTCCACTTGACAAACTGGGTATTTACCAGACAAATGCAGGGGTGGTGGGCTTCTGTGGGCTTGTGTCCTCGCTTTTAGGCATACTGACAGTCTTGAGGCCCACTCTTAAAATAAAGCCATGA

Function

symbol description
pex11a Predicted to be involved in peroxisome fission and regulation of peroxisome size. Predicted to be located in membrane and peroxisome. Predicted to be integral component of peroxisomal membrane. Predicted to be active in peroxisomal membrane. Orthologous to human PEX11A (peroxisomal biogenesis factor 11 alpha).

GO:

id name namespace
GO:0016559 peroxisome fission biological_process
GO:0044375 regulation of peroxisome size biological_process
GO:0005778 peroxisomal membrane cellular_component
GO:0005779 integral component of peroxisomal membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04146 Peroxisome
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-050419-121 Predicted to be involved in peroxisome fission and regulation of peroxisome size. Predicted to be located in membrane and peroxisome. Predicted to be integral component of peroxisomal membrane. Predicted to be active in peroxisomal membrane. Orthologous to human PEX11A (peroxisomal biogenesis factor 11 alpha).

Ensembl:

ensembl_id ENSDARG00000060707

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025579 True 741 mRNA 0.48 3 25546227 25550960

Neighbor

gene id symbol gene type direction distance location
XLOC_012816 NA coding upstream 46619 25477794 ~ 25499608 (+)
XLOC_012817 NA coding upstream 49616 25492411 ~ 25496611 (+)
XLOC_012815 si:dkeyp-59c12.1 coding upstream 319523 25225524 ~ 25226704 (+)
XLOC_012814 fam174b coding upstream 536561 25003207 ~ 25009666 (+)
XLOC_012813 rgma coding upstream 613898 24919614 ~ 24932329 (+)
XLOC_012819 fkbp16 coding downstream 102639 25653599 ~ 25745636 (+)
XLOC_012820 si:ch211-39k3.2 coding downstream 201632 25752592 ~ 25754918 (+)
XLOC_012821 znf710a coding downstream 497168 26048128 ~ 26094678 (+)
XLOC_012822 RASGRF1 coding downstream 786909 26337869 ~ 26418637 (+)
XLOC_012823 ctsh coding downstream 871164 26422124 ~ 26428525 (+)
XLOC_012812 AL935295.1 non-coding upstream 805506 24737234 ~ 24740721 (+)
XLOC_012811 CT030043.1 non-coding upstream 903125 24642987 ~ 24643102 (+)
XLOC_012809 CR847971.1 non-coding upstream 1062942 24477526 ~ 24483285 (+)
XLOC_012825 NA non-coding downstream 905721 26456681 ~ 26461427 (+)
XLOC_012828 AL935332.1 non-coding downstream 1196851 26747811 ~ 26747927 (+)
XLOC_012832 NA non-coding downstream 1446616 26997576 ~ 26998589 (+)
XLOC_012835 BX640463.2 non-coding downstream 1645250 27196210 ~ 27196326 (+)
XLOC_012841 BX649600.1 non-coding downstream 2185764 27736724 ~ 27736840 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_01168439_01172788 PEX11A coding CI01000013 null 1167734 ~ 1174268 (-)