RNA id: TCONS_00025599


Basic Information

Item Value
RNA id TCONS_00025599
length 1803
RNA type mRNA
GC content 0.45
exon number 7
gene id XLOC_012831
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26899316 ~ 26920132 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGGAGTGTTATGGCAGCCAGGAAACGGACAGCCATCTTATAAATCTGCAGCCTTTCTGTTACATTTGCAACCTAAACGGCTTTATTCCATCTTTTAACGATGGGTCAGTGCGGGATTACATCATCTAAGACCGTTTTGGTGTTCCTGAACCTGATATTTTGGGCTGCTGCTGGCATTCTGTGCTATGTCGGGGCATATGTGTTCATCACATATGATGACTATGACCATTTCTTTGAGGACGTGTACACCCTGATCCCAGCTGTCGTCATCATTGCAGTTGGAGCGCTGCTGTTTATTATTGGGCTCATCGGTTGCTGTGCTACTATTCGAGAGAGTCGCTGCGGACTTGCCACGTTTGTCATCATTCTTATGCTGGTATTTGTTACTGAGGTGGTGGTAGTGGTTCTTGGCTATATTTACAGAGCGAAGGTAGAAGATGAGGTCAATCATTCCATCCAGAAAGTGTATAATGAATATAACGGCACCAACACAGATGCTCCCAGCCGCGCTATTGACTATGTGCAAAGACAGCTCCATTGCTGCGGCATCACCAACTTCGCAGACTGGAGGAACACGCGCTGGTTTAAGGAGTCCAAGAACAACAGCGTGCCATTGAGCTGCTGCAAACCTAACGTGAGCAACTGCACTGGCTCCCTCTTGCACCCCGGAGACCTTTATCCTGAGGGATGTGAGGAGCTGGTGGTGAAAAAACTGAAAGAGATCATGATGTACGTCATCTGGGCCGCCCTGACATTTGCTGCAATTCAGATGCTTGGAATGCTGTGTGCTTGTGTGGTTCTGTGCCGCAGAAGCCGAGACCCGGCCTATGAGCTCCTGATGACTGGAGGGACGTATGCATGAAAAAACACCCAGCAGACAGACTCTCTtctctatctcacacacacacacacacacacacacacacacacacacacacacacacacacactgggctcAGGGTTCTGTCGGTGTGAGGTGGCACACTGGATATGCCCGAATTAtctctctttctaaacaccttaCACAGGGTTTGCTCACACGATGCACTGGTGATGGGTGAAACGAAGCGcatcctatttatttattcagtatatgTCACTGAAAATGACTGCGTTTTAATTAAAACctttgttttttctctctctcaaagGCGTCGAGCCAGACTGCGAAATGGCGAGTTTATAATCCTGTTGAGAAGACTTTAACTTGAATCGTTAACTTTTTTCCTCTATTATATGGAGTTGAAGATGCTGTTATGGTATGAATAATATGTGGAATGTATGCTTTCCTCATTTGGTTAGTTTTGCACTATGTGTATGGTTTAGTTCTATATTACCTTAACAAACAGAAAGCTGGTGAAACAGCTGAAATGCTTTGATACAAGAGGATTGGCTGTCTCTCAGATGTCACCCATCACCAGTCTGGCGCAGCGGTAGTGTGAGAGACAGATCTAGATTGACCATGCAAGGCATTGTGGGTACAGTCgtatggctgtttgttttgaaatgaagGTCACATTGGTTTATGTGCGAATGGGTTTGGGGAGGGAGGGCTGGCGGCTTTACATGCACTACCTACCATTCACCCAATCCTTATATTCTTTTCctcctctttttttccccctttgctTACAGTGTGAACATTACTAGTCTAGTAATCTATAGTTAGTTTGGATAACACGTAGGTATGTAGAACAGGGTCAACagtgtattattttaaaatgaatgtacAGAGGGAGGGGGAAAATGGTGAAATAAGCTTGTCATttcaatctttaaaataaatgtttcataagTTGACA

Function

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7787 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including eye; fin; gonad; heart; and integument. Orthologous to human TSPAN3 (tetraspanin 3).

Ensembl:

ensembl_id ENSDART00000050230

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027119 lncRNA upstream 437889 26456681 ~ 26461427 (+) True XLOC_012825
TCONS_00026901 lncRNA upstream 1399708 25477794 ~ 25499608 (+) True XLOC_012816
TCONS_00026904 lncRNA downstream 77444 26997576 ~ 26998589 (+) True XLOC_012832
TCONS_00025618 lncRNA downstream 651356 27571488 ~ 27614703 (+) False XLOC_012839
TCONS_00025634 lncRNA downstream 2236695 29156827 ~ 29174491 (+) False XLOC_012848
TCONS_00025635 lncRNA downstream 2236717 29156849 ~ 29163114 (+) False XLOC_012848
TCONS_00025646 lncRNA downstream 3209639 30129771 ~ 30131831 (+) False XLOC_012854
TCONS_00025598 mRNA upstream 2490 26895994 ~ 26896826 (+) True XLOC_012830
TCONS_00025596 mRNA upstream 49247 26829086 ~ 26850069 (+) False XLOC_012829
TCONS_00025597 mRNA upstream 49548 26829362 ~ 26849768 (+) True XLOC_012829
TCONS_00025595 mRNA upstream 144086 26750516 ~ 26755230 (+) True XLOC_012827
TCONS_00025593 mRNA upstream 147102 26743749 ~ 26752214 (+) False XLOC_012827
TCONS_00025601 mRNA downstream 80718 27000850 ~ 27078219 (+) False XLOC_012833
TCONS_00025600 mRNA downstream 80718 27000850 ~ 27078219 (+) False XLOC_012833
TCONS_00025602 mRNA downstream 80983 27001115 ~ 27073137 (+) False XLOC_012833
TCONS_00025603 mRNA downstream 157721 27077853 ~ 27085605 (+) False XLOC_012833
TCONS_00025604 mRNA downstream 157721 27077853 ~ 27085828 (+) True XLOC_012833
TCONS_00025594 other upstream 151389 26747811 ~ 26747927 (+) True XLOC_012828
TCONS_00025591 other upstream 468131 26429665 ~ 26431185 (+) True XLOC_012824
TCONS_00025586 other upstream 472679 26425139 ~ 26426637 (+) True XLOC_012823
TCONS_00025570 other upstream 2158595 24737379 ~ 24740721 (+) False XLOC_012812
TCONS_00025607 other downstream 276078 27196210 ~ 27196326 (+) True XLOC_012835
TCONS_00025621 other downstream 816592 27736724 ~ 27736840 (+) True XLOC_012841
TCONS_00025628 other downstream 1383759 28303891 ~ 28304317 (+) True XLOC_012845
TCONS_00025637 other downstream 2254961 29175093 ~ 29175208 (+) True XLOC_012849
TCONS_00025648 other downstream 3209667 30129799 ~ 30130552 (+) False XLOC_012854

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_00464450_00466620.mRNA True 761 mRNA 0.47 5 CI01000013 464349 ~ 466620 (-)