AMCG00008376


Basic Information

Item Value
gene id AMCG00008376
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 260274 ~ 263022 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008376
GACCGCTACATCCTGTCTGGGAGTGAGGACCGCACCCTGGCCGTGTTCGACCGCCGGGCTGGCAGACTGCTGCACAAGATACAGCTGAGCTCATACCTGCTGTCCCTGAGCTACGGGCGTGAGGGGGCGGAGCTATGGGCAGGGGATAACCAGGGTCAGCTGCACGCTTTCTCCCCATCCTGCGGCTCCTTCCTGCCCCTGGGGCAGTTCTCTctcagTGTGGAGGGAGGGATGCTGGCGGCCGCTTCGGGGGACATGTCAGTGGAGGTGTGGAAGGTGGAGGAGTGA
>TU60884
TGAAGAGCCTGCGTCTCCATGGTAACGCCGTGCTGTGCGTCGCCGCAGACGACCGCTACATCCTGTCTGGGAGTGAGGACCGCACCCTGGCCGTGTTCGACCGCCGGGCTGGCAGACTGCTGCACAAGATACAGCTGAGCTCATACCTGCTGTCCCTGAGCTACGGGCGTGAGGGGGCGGAGCTATGGGCAGGGGATAACCAGGGTCAGCTGCACGCTTTCTCCCCATCCTGCGGCTCCTTCCTGCCCCTGGGGCAGTTCTCTGTGGGGCACCGCGCCCTCGTCACCGGCGTGCACAGCTCCCCCGGCGCTCTGTACACCTGCTCCACCGACCGCACTGTCAAGgtGCACCTCCCCTGTGCCCCCCCCAGGACACTGTGCACACTACAGCACCACAATGTTATAAATGGGctcagTGTGGAGGGAGGGATGCTGGCGGCCGCTTCGGGGGACATGTCAGTGGAGGTGTGGAAGGTGGAGGAGTGAACGAGGGGCTGAGATGCAGAAAAGAAGGGATGAGCTCCAGATGAGAGAAGCCAGTTTCAGTCCTTTATTCTTCAGCTCTAAAACTCAACTAATTGCCATTCCTGTCCTGTGACGCCAGGCAGCCACTTCTCCGTGCCGCTGGTCTCGTATAACTGTGTCTAGCACTCTGGccggccccttggggccactcCTACCCCAGCCCTGGTCTGGAGACAGCCGGCACTGCGGTACTGACCCATTCCTGCAGTCCAGTCCCCTGCTGAAGACACACTAAGGGCTCATTCATACCAGAGGTTTGTTTCGTACTCAGTGTGGTTCGGTTCGTTTGGAGAAGAGTGTGAACACATTTCGATTGGCAAACGAACCGAACTGAACTGAGACACCGATATGACTGCTACAGTTTGTTTACATATTGGACCCATATATGGTTTGGTTGTATCAGATGACTGTCACATGTGTTAGACTACTGCATGTAGTGACTTTATTGCCGTCATATAGatttgttattgtacgcgtTATGTGGCCATTTCTTAtttgcactaatcatgtaaaatgtaaatatccggtgttttattaatacaaaactaacCAAGCTCCCTGTTTATTGCAATgtgatctgagtcctgagaaaacacagaagtgaacCACGAAAACGAACCCGAGTTTGTTTCCAAACGAACTGAGCACGTCTACACAAGGCCAGTGTGAGCGGCtgcacactgatacattgtttcacagcaaaCGAACCGAACCGATTTGGTTTCACAGGAACCCAGTGTGAACAGGGGGTCAGAGACTGATTTCTCAGAGGAACTCATCCCAGTTCAATGTTTACAGAACCATCAGATCTGATCAGTTGAGGCATGAAGGTGTGGCTTATGAACCCTGCCGGACTGACTGGGAAACACCGAGGGGCTCCTGCAGCTGAACacagactgaacacacacacacacagagtgaaTGCACACGCACATACtgaatacacaacacacaaacacaacacgcAGACTcaactgaacacacacacactctttaagaacataagaaagtttacaatcgagaggaggccattcgacccatcgtactcgtttggtgtccattaataactaagNNN

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03015 mRNA surveillance pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008376 False 288 mRNA 0.64 3 260324 261908
TU60884 True 1599 lncRNA 0.52 4 260274 263022

Neighbor

gene id symbol gene type direction distance location
AMCG00008374 mri1,LOC107594353,LOC107703717,LOC107700835,LOC107709591,LOC106595636 coding upstream 4052 253479 ~ 256222 (+)
AMCG00008372 trmt1 coding upstream 17220 234895 ~ 243054 (+)
AMCG00008371 NA coding upstream 41399 214645 ~ 218875 (+)
AMCG00008367 cacna1ab coding upstream 132545 127056 ~ 127729 (+)
AMCG00008368 NA coding upstream 148967 97569 ~ 111307 (+)
AMCG00008373 LOC104964355 coding downstream 6738 269760 ~ 273986 (+)
AMCG00008386 NA coding downstream 44964 307986 ~ 311984 (+)
AMCG00008384 NA coding downstream 64601 327623 ~ 340268 (+)
AMCG00008389 NA coding downstream 78740 341762 ~ 344446 (+)
AMCG00008385 NA coding downstream 89544 352566 ~ 358341 (+)
G48716 NA non-coding upstream 2010 257582 ~ 258264 (+)
G48647 wdr83 non-coding upstream 7792 251307 ~ 252482 (+)
G48637 NA non-coding upstream 34330 225265 ~ 225944 (+)
G48636 NA non-coding upstream 37487 222053 ~ 222787 (+)
G48631 NA non-coding upstream 55373 204481 ~ 204901 (+)
G48720 NA non-coding downstream 998 264020 ~ 264390 (+)
G48721 NA non-coding downstream 3552 266574 ~ 266881 (+)
G48796 NA non-coding downstream 164859 427881 ~ 488584 (+)
G48803 NA non-coding downstream 175961 438983 ~ 444637 (+)
G48806 NA non-coding downstream 193627 456649 ~ 458299 (+)
AMCG00008375 cacna1a other upstream 55879 153189 ~ 204395 (+)
AMCG00008369 NA other upstream 165713 87317 ~ 94561 (+)
G48811 NA other downstream 210723 473745 ~ 551906 (+)
AMCG00008397 ccdc130 other downstream 254477 517499 ~ 525325 (+)
G48846 NA other downstream 324258 587280 ~ 588446 (+)
G49013 NA other downstream 613532 876554 ~ 879513 (+)
AMCG00008423 NA other downstream 702816 965838 ~ 968583 (+)

Expression


Co-expression Network