AMCG00008632 (asf1b,asf1bb,LOC103026007,LOC107599302,LOC108429686,LOC101069596)


Basic Information

Item Value
gene id AMCG00008632
gene name asf1b,asf1bb,LOC103026007,LOC107599302,LOC108429686,LOC101069596
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6908774 ~ 6915444 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008632
ATGGCGAAGGTGCAAGTGTTGAATGTCGCGGTTCTGGACAACCCGAGTCCGTTTGGGAATCCCTTTCAATTCGAAATCACCTTTGAATGCATGGAGGACCTTCCCGAAGATTTGGAGTGGAAGATCATCTATGTAGGTTCTGCCGAGAGTGAGGAGTACGACCAAACTCTCGATTCAGTTCTGGTTGGTCCAGTTCCAGCAGGAAGGcacatgtttgtgtttcaggCGGATGCTCCAAACACTGGCCTCATCCCTGAAAGTGATGCTGTGGGTGTGACTGTAGTCCTGATCACTTGCACCTACAGAGGCCAGGAGTTTATCAGGGTGGGCTATTATGTCAACAATGAGTATACTGACCCAGAGCTCCGGGAAAACCCCCCTCTCAAACCAGACTACACACAGCTCCAGAGAAATATCCTGGCATCTAATCCCCGTGTCACCCGCTTCCACATCAACTGGGAGGGTTGTCCTGACAAGATGGAAGACGTAGAGAATGTTGACCCAGCTCCCAATGCCATGTTGCCCCCCAGCTGCGCCCCCACTAAGAGTCCTGGGCTCAGTCTTCTACCCGAGAACTCCATGGACTGTTTGTAA

Function

symbol description
asf1bb Predicted to enable histone binding activity. Predicted to be involved in DNA replication-dependent nucleosome assembly and DNA replication-independent nucleosome assembly. Predicted to act upstream of or within chromatin assembly or disassembly. Predicted to be located in nucleus. Orthologous to several human genes including ASF1B (anti-silencing function 1B histone chaperone).
asf1b Predicted to enable histone binding activity. Involved in DNA replication-dependent nucleosome assembly and DNA replication-independent nucleosome assembly. Located in chromatin and nucleoplasm. Part of protein-containing complex. Biomarker of breast cancer.

NR:

description
histone chaperone asf1b-A

GO:

id name namespace
GO:0006333 chromatin assembly or disassembly biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K10753 ASF1; histone chaperone ASF1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008632 True 594 mRNA 0.52 4 6908774 6915444

Neighbor

gene id symbol gene type direction distance location
AMCG00008630 samd1,LOC108442215,LOC100700176 coding downstream 79075 6819964 ~ 6829699 (-)
AMCG00008631 LOC107580959 coding downstream 104266 6798763 ~ 6804508 (-)
AMCG00008627 LOC108442223,LOC107594236,LOC107703743,LOC103374416,LOC100702196 coding downstream 166545 6720582 ~ 6742229 (-)
AMCG00008628 ndufb7,ndub7,LOC106591659 coding downstream 189690 6716109 ~ 6719084 (-)
AMCG00008623 NA coding downstream 234152 6666863 ~ 6674622 (-)
AMCG00008635 NA coding upstream 84110 6999554 ~ 7009561 (-)
AMCG00008636 NA coding upstream 298225 7213669 ~ 7276093 (-)
AMCG00008637 NA coding upstream 400682 7316126 ~ 7337849 (-)
AMCG00008638 tubb4b,tubb2b,LOC107587400,LOC107393497,LOC104942712,LOC103024068,LOC107717448 coding upstream 425990 7341434 ~ 7342284 (-)
AMCG00008642 ccnt1,ccnt2,LOC102787965 coding upstream 471608 7387052 ~ 7402820 (-)
G50437 NA non-coding downstream 3197 6905340 ~ 6905577 (-)
G50435 NA non-coding downstream 4385 6904077 ~ 6904389 (-)
G50381 tecr,LOC107703756,LOC107573605,LOC107594239,LOC107390378 non-coding downstream 202485 6692806 ~ 6706289 (-)
G50372 NA non-coding downstream 257431 6647011 ~ 6651343 (-)
G50361 NA non-coding downstream 281749 6626109 ~ 6627025 (-)
G50496 NA non-coding upstream 451181 7366625 ~ 7366930 (-)
G50514 NA non-coding upstream 463594 7379038 ~ 7379487 (-)
G50557 NA non-coding upstream 738636 7654080 ~ 7657391 (-)
G50558 NA non-coding upstream 746708 7662152 ~ 7662442 (-)
G50560 NA non-coding upstream 753404 7668848 ~ 7676186 (-)
AMCG00008633 prkaca,LOC108429687 other downstream 23087 6839077 ~ 6885687 (-)
G50267 LOC107575789 other downstream 1023324 5748890 ~ 5885450 (-)
AMCG00008608 NA other downstream 1114779 5786620 ~ 5793995 (-)
AMCG00008609 NA other downstream 1122446 5655689 ~ 5786328 (-)
AMCG00008602 NA other downstream 1298445 5587075 ~ 5610329 (-)
AMCG00008634 NA other upstream 5263 6920707 ~ 6933089 (-)
G50476 NA other upstream 32445 6947889 ~ 7151472 (-)
G50602 NA other upstream 985891 7901335 ~ 7902606 (-)
G50656 NA other upstream 1219137 8134581 ~ 8135414 (-)
AMCG00008662 NA other upstream 1267485 8182929 ~ 8190177 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026757 asf1ba coding NC_007114.7 CM002887.2 49504919 ~ 49514874 (-)
grasscarp (Ctenopharyngodon idella) CI01000033_01336781_01348511 ASF1BA, AS1LA, AS1LB, ASF1BB, ASF1B.L, ASF1B coding CI01000033 null 1336564 ~ 1349405 (-)