CI01000033_01336781_01348511 (ASF1BA, AS1LA, AS1LB, ASF1BB, ASF1B.L, ASF1B)


Basic Information

Item Value
gene id CI01000033_01336781_01348511
gene name ASF1BA, AS1LA, AS1LB, ASF1BB, ASF1B.L, ASF1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000033
NCBI id null
chromosome length 1934898
location 1336564 ~ 1349405 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000033_01336781_01348511.mRNA
ACCAGTGTTAAATAATGAACTCTCTTATATATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATATAAAATAATATCTTCCGCTGAACCCAACTTTAGCCATCAATGAGTGTGTGAAGCCAGTGGGAGGTCTCGTCGATTTAACAGCTGTCACTGTCGCCCAATCAGCGTCCGCAAAATCCGGGACCTTCGGTTCACTGACCAATCAGAGCGCAAACCAATCCGCTTTCCCTGTCGCGTCATCAGAGCTGTCTGAACAGTCTGGCGGGAGACAACGCAGCTCGTATTGTCTGTCAGTTTTTGAACGGGTTTGCGAAATAATATTTGTTTTTCGTCTACACGTTACTCTAGATTATATTTTGCTTTCTTGTTTTTCTTTTAATTTGGGAGGAGAGACAACCTAGACTTATCTGTTCTCCTGCTTTAACAGTATATAGTCTACCGTATTGGACTTTCACAACATAATTATAGCTCGCAAGCTAACAAGTGAAGCCAAAGATTCGAGAGTTGACTTTATAACGTCTATTGAGTATTTAAACTTGTTCTCGGTCTATTAAGTAGTTTTTGGAGGTAAATTGTGACAATTTCCTTGTTAGTATAGTAGAGCTATGGCAAAAGTACAAGTGCTAAATGTAGCTGTCCTGGACAACCCAAGTCCATTTGGAAACCCGTTTCAATTCGAAATAACGTTTGAGTGCATGGAGGATCTTCCTGAGGATCTCGAATGGAAGATTATTTACGTCGGCTCAGCAGAAAGTGAGGAGTATGATCAGACCCTTGACTCTGTCCTGGTTGGTCCAGTTCCTGCAGGCCGACACATGTTTGTGTTTCAGGCGGATGCTCCAAACACCGCCCTCATACCTGAGAGTGATGCTGTGGGTGTTACTGTTGTTCTGATCACATGCACATACAGAGGACAGGAGTTCATACGCATCGGCTACTATGTTAACAATGAGTATACGGACACTGAGCTTCGTGAGAACCCGCCCCTTAAACCTGACTATGGACAGCTCCAGAGGAACATTCTGGCTTCCAATCCACGTGTAACCAGATTTCACATCAACTGGGAGGGATGTGCCGAGAAAATGGAGGATTCAGAGAACGTGGACCCCGCGCCTAACGCCATGCTGCCACCGTCCTGCACCCCGGGAAAAGCACCTCCACTAGGACTGGTGCCAGACAACTCCATGGACTGTTTGTAGTGACGCAGGCTCCTGTGAATAATCCTCACATCTCAAGGCTCATCCATGAGCTCAGGTCAATCTGGACACTGTGGAGAGGAGAGGGAGGCGGGATTATTCAAACACATCAGAAAAAAAAAAAAAAAAAAGGTTTATCTAATTTTGTTACACTTGTCACACCTGTTTGAAACAAATCAGTGGTGTGCAGAATATGGCAGATCCTCCGGTACGCAATAAA

Function

symbol description
asf1bb Predicted to enable histone binding activity. Predicted to be involved in DNA replication-dependent nucleosome assembly and DNA replication-independent nucleosome assembly. Predicted to act upstream of or within chromatin assembly or disassembly. Predicted to be located in nucleus. Orthologous to several human genes including ASF1B (anti-silencing function 1B histone chaperone).
asf1ba Predicted to enable histone binding activity. Predicted to be involved in DNA replication-dependent nucleosome assembly and DNA replication-independent nucleosome assembly. Predicted to act upstream of or within chromatin assembly or disassembly. Predicted to be located in nucleus. Is expressed in proliferative region. Orthologous to several human genes including ASF1B (anti-silencing function 1B histone chaperone).
asf1b Predicted to enable histone binding activity. Involved in DNA replication-dependent nucleosome assembly and DNA replication-independent nucleosome assembly. Located in chromatin and nucleoplasm. Part of protein-containing complex. Biomarker of breast cancer.

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K10753 ASF1; histone chaperone ASF1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000033_01336781_01348511.mRNA True 1705 mRNA 0.36 4 1336564 1349405

Neighbor

gene id symbol gene type direction distance location
CI01000033_01324488_01329483 NA coding downstream 7064 1324248 ~ 1329500 (-)
CI01000033_01312689_01320687 PRKACAA, PRKACA.L, PRKACA, KAPCA coding downstream 15877 1312626 ~ 1320687 (-)
CI01000033_01296158_01307173 SAMD1A coding downstream 29391 1296158 ~ 1307173 (-)
CI01000033_01274093_01274303 NA coding downstream 62126 1274093 ~ 1274438 (-)
CI01000033_01255331_01259169 GIPC1 coding downstream 77385 1254970 ~ 1259179 (-)
CI01000033_01362658_01368574 TUBB4A.S, TBB2C, TUBB4B, TUBB4A, TUBB, TUBB4B.L, MGC53997, TUBB2B coding upstream 12372 1361777 ~ 1368574 (-)
CI01000033_01380358_01381124 NA coding upstream 30649 1380054 ~ 1381124 (-)
CI01000033_01394360_01396488 NA coding upstream 43729 1393134 ~ 1396504 (-)
CI01000033_01415209_01416422 NA coding upstream 65733 1415138 ~ 1416422 (-)
CI01000033_01460962_01480142 NA coding upstream 111557 1460962 ~ 1480142 (-)
G168871 NA non-coding downstream 57531 1278624 ~ 1279033 (-)
G168870 NA non-coding downstream 58167 1278040 ~ 1278397 (-)
G168869 NA non-coding downstream 59539 1276467 ~ 1277025 (-)
G168868 NA non-coding downstream 60393 1275886 ~ 1276171 (-)
CI01000033_01244910_01251102 NA non-coding downstream 91511 1244635 ~ 1251102 (-)
G168877 NA non-coding upstream 25339 1374744 ~ 1374973 (-)
G168906 NA non-coding upstream 100306 1449711 ~ 1449915 (-)
G168908 NA non-coding upstream 134688 1484093 ~ 1486349 (-)
G168918 NA non-coding upstream 199874 1549279 ~ 1551732 (-)
G168923 NA non-coding upstream 218184 1567589 ~ 1567799 (-)
G168847 NA other downstream 107015 1225588 ~ 1229549 (-)
G168237 NA other downstream 564973 757371 ~ 771591 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026757 asf1ba coding NC_007114.7 CM002887.2 49504919 ~ 49514874 (-)
bowfin (Amia calva) AMCG00008632 asf1b,asf1bb,LOC103026007,LOC107599302,LOC108429686,LOC101069596 coding CM030126.1 CM030126.1 6908774 ~ 6915444 (-)