G168908


Basic Information

Item Value
gene id G168908
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000033
NCBI id null
chromosome length 1934898
location 1484093 ~ 1486349 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU191854
GCTGAAGTGGGGTGGGATGTGGATCAATAACCAGGTGAGTAACTGTTACTACACTTTGGGATGCCAACAATAGTGATCTACCTTGCTGTTTACTACATAGTCAGCATCCTGCTTGAAACAGAACCTGCATGTACGCAGCAAATCTTTGTGTCACAAGTAGTATGTGAAAACCCATCTGATTCCAGTAGTTTGCTGTTAGCATGTTGCTCAACTAACAGTCTTATACTCTAATTTACATGAAATTTCACAGAACACATGTATATTCAGTAAATCTGTCATATTGTAATTAGACTGTGTTGTCTTTGTATGTACACTATGGATTCAGAATAGCATACTAGCACACTAATCTTACTACTTTCTGCTGCAGAAATACTAAGAGTAGTAGGGTAGTATGTTATTTTGAATTTATTCAATTTTTTAAACCGAACTCATTGCAGTGTATTCTGGGATTGCATCCTACTTAATGATGCATTAAAAGGATAGTTCGCGCAAAAAAAAAAAAATAGGGACATCATTTACTCACCCTCATGTCGCTCCAAACCGGTTTGGCTTTCTGTTTTGCGGAACATTAAAGAAGATATATTTAGAAATATCTCAGTGTTTTTTGTCCATATAAAGTCAATGGTTGCCAAAACTTTTGGTTACAAATATATAGGCCTACTTTTAAAAAAAAAAAAAAAAGTTGTACAGGAACAACATGAGGATGAGTAAATGATGACAGAATTTACATTTTTGGGTAAACTATCCCTTTAATTTGTGCCCTATGTAGGCAGCCTACTAGAGTCTATATCTGTACTGTCATCATATCTGTTACCATCATGTTCTGTTCTAACATCACCTCTTTTTAAACCACGGAAGTAATTGAGCTGAATGCAGTGTAAGGGTTAGTGTATCCTGTCCTCAACTATCTGCTTCATCACGCAAGCAAGAGCTCGGAGCAAAGACAGCGACATGGTCAACAGTCTGTGACCTTCCTTTCCCCAGAGGCTTTTGCACTCTAGATCTGTCCAGAGTGGGATAATGAGCCTGTTGTTTTTATACTGTAGATCAGTAGTCCATGTCTTAATTGCACTGCAAACATTCTTTGTTCTTGTATGCTATCCTGATTGCTCACATTTAGCAAACAGTGAAATAAGTTTAGTGAGCCAATAAGGCCCACACTGCTCGCATTATTACTCAACATGATGTTTGCAGCTTTAATCAGGAGAAAGAGCCAACATCAATTCTGGTTCCCAGTAATGTTTTGGAAGTAGGGATGGGGAAAATGAGCAAAATGTTATGAGAATTTTATACTGTTAACTGTATGTATTCATCGCTTAAAATTCAGCCAAAAAATGTTTTATGTATTACCTGCAGTAATGCCTATTTTTAGTACTATTCTCTAGTACTAAATGATGTGTGTGTGTGTGTGTGTGTGTGTGTATAGACTTGATTTACAAACAAAAGACTGCAATTAAAGTCTGCGACAAAGTTTGTAAATGGCACAACTGTAAATCTGCGGTTTTGTTTCATTTTCAAGGACTTTTAGTTTGTTATTCGTCATTTCCTGTGCTTGCCTTCAGTTTTCTTCCAATGCCATGGTTATTCATTGTTTCACTGTTATTTTAAACTTCCAATTCATCAAAGAATCCTGAAAAAAGAATATCACGGTTTCCACAAAAACATATTAAGCAGCACATCTGCTTTCAACTGTTATTAATAATAAAAAAAAAATAATAAAAAAAAAAGATATTTAAGCAGCAAATCAGCATATTAGAATGAAGATTTCTGAGTGATCATGTGACAGTGAAGACTGGAGTAATGATGCTGAAAATTCAGAAGGAATAAATTACATTTTAAAAATTTATTAACTAAAAACTGAATTTTAGTTGTTCATTTACATGATTTTGGGGGCCTGAAAATGCAAATTACAATTCCAAAATCGCAAATTTAAGTTACAAAAACGCAAATTTGTGAAAACTCTGACATCATGCGCATGAGCATGTAAACAGTCTATAGTGTTTCTTTACAAAGCAACATCGCCAACTACTGGCTTGGCATGCATAATACAGCGTTTTTAGTAATTTTTTTGCTGATCCATGTGAATGGGGATCATTTTGACAATGTCATCTGTACACAAAAAAAAAAATGCAAAGGAAAACCTTTTCCATTTTTAGTACATGGTTGTCGTGTAAATGTAACCTTATTTTTCACTTTTGAACAGTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU191854 True 2206 lncRNA 0.35 2 1484093 1486349

Neighbor

gene id symbol gene type direction distance location
CI01000033_01460962_01480142 NA coding downstream 3951 1460962 ~ 1480142 (-)
CI01000033_01415209_01416422 NA coding downstream 67671 1415138 ~ 1416422 (-)
CI01000033_01394360_01396488 NA coding downstream 87589 1393134 ~ 1396504 (-)
CI01000033_01380358_01381124 NA coding downstream 102969 1380054 ~ 1381124 (-)
CI01000033_01362658_01368574 TUBB4A.S, TBB2C, TUBB4B, TUBB4A, TUBB, TUBB4B.L, MGC53997, TUBB2B coding downstream 115519 1361777 ~ 1368574 (-)
CI01000033_01534011_01536432 NA coding upstream 46522 1532871 ~ 1536812 (-)
CI01000033_01757249_01761108 NA coding upstream 270244 1756593 ~ 1761108 (-)
CI01000033_01783293_01786740 NA coding upstream 296712 1783061 ~ 1786744 (-)
CI01000033_01792241_01801250 AATKA coding upstream 305866 1792215 ~ 1801271 (-)
CI01000033_01805479_01816594 NA coding upstream 318738 1805087 ~ 1816594 (-)
G168906 NA non-coding downstream 34178 1449711 ~ 1449915 (-)
G168877 NA non-coding downstream 109120 1374744 ~ 1374973 (-)
G168871 NA non-coding downstream 205060 1278624 ~ 1279033 (-)
G168870 NA non-coding downstream 205696 1278040 ~ 1278397 (-)
G168869 NA non-coding downstream 207068 1276467 ~ 1277025 (-)
G168918 NA non-coding upstream 62930 1549279 ~ 1551732 (-)
G168923 NA non-coding upstream 81240 1567589 ~ 1567799 (-)
G168924 NA non-coding upstream 85352 1571701 ~ 1571925 (-)
G168926 NA non-coding upstream 87014 1573363 ~ 1574455 (-)
G168928 NA non-coding upstream 88569 1574918 ~ 1575243 (-)
G168847 NA other downstream 254544 1225588 ~ 1229549 (-)
G168237 NA other downstream 712502 757371 ~ 771591 (-)

Expression


Co-expression Network