CI01000033_01394360_01396488


Basic Information

Item Value
gene id CI01000033_01394360_01396488
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000033
NCBI id null
chromosome length 1934898
location 1393134 ~ 1396504 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000033_01394360_01396488.mRNA
AGTTGTTCTTTTACTCATGGAGATGCATCATAAATACTATTTTGTAAAGAAAAGTGGTCTACACAAGTCTACCAGAGGAATGGAAAACTGCTGGATGAATCGAGGTTTAATGGCTGTCATTGACCAGATTGTGTGCCGCTGTCTCCTTTGTTTACATGAGGCGAGTCTGTGCAATGACGGATGTAGCCAAAATATTGCTGCTAATAACTGTGCCAACAGGGCTTATCACATGTACACAGATACATGCACAGTTCCCCCATTATATTGCGGAACAGAGGCGTCAGAATGCAATACTCAGGACACTGCTTATGACAACACTCCTACGACACAGACCTCGCCGCCATCGCCGCCAGTTTTGGACGAGACCAGTCGGACCTCTAGTTGGTGGGACAACTTTGAGAACGAAGTGGTTGTTGCTAAAGAATGGCGAGAGAATTTTCATTTGTCAAGGACATCACTGTTGTCTTTGAGTGAGCTGCTTCGCCCACACATTGAAGGGAAGACAACTGTAATGAGATCGCCTGTCAGTGTTGTCAAAAAAGTTGCCTGCACACTGTATTTAGCAGGCAAGGGCAGATTACACAAGACGGCAAATGCATTTAGATTGTCAAGACAGGTGGTGTCGAAAATAACTGAAGCACGGTTTGGAGCATTGAGAAGGGCGATGGACATTTATCTAAATGACCTTCCCTTTGTCATCTATGCCTGTTTTGTGCTCCATAACTACTACGAGGCCACCAAGGAGACGATGGACGATTCAGCATGACAAGGACAACCAGCAAGACACACAGACTTAGTTCAGAACTTTCAGAGCATTGTCAGCTCATTTTGGTGTCACTACTGGCCACTTAAAAAGCATAACAAAGTAGCATAACCTGATCTCATAACCTAAAATTTGGTTAGGGTTAAAGAAAGCTTTTTTTGTGTGTGTGAACTTACTGTGTTTTTGACATAACCTTGTGTGTATTTGACAGTTTAAGTTCAATTCACGAGTTCACACTTAGATAGAGTAAAGGTTATGCGTATTTGGCATGCTGTCCGGGGGAGGACTCCACTCTCGGAAATTTGGCCTGAACACAGAGTACTCCCCCCGGTTGTGATAAGAATAGTTAGGACTGATAGGACTAAGTTTTAGACAGAGTATTTGATGCACGAGCTGTACAGTCTCCACCTTCTTCTGGAAAGTGAGGTGGGGAGCAGCAGTTCATTTGAATTTAAAGATCTTTCACTCAAAAATGGATATAATAAATGATCTATGGGGTATTTTGAGCTGAAACTTCACAGACATATTCTGGGGACACCTGAGACTTAGGCTATATTACATCTTGTAAAAAGAGGCGTCCTAAATTGAAGCACTAACTAAGCAGTGAAAAACTGAATAAATAAATAAATAAATAAAAGCAGGAGAGAGATTCCACCCGAGTACTGTTAACAACTGTATTGCTCACAAATTTTGAATGCAAATATTGCATAACCATGCCACGGCGGGCAAGACTAAAAACCTAGCCATAGCTTACCTTGTATAGTTGATGTCTGTTCTAAACAAGTCGTTGTCGGCTGGGTTTAAGATGCTGATAATATCGTCGTAATTTCAATTATCTGTTAGTTCTCTTTCAAAAGACAGAAGCGCCAAGTTAAGGCGTCCTGTCAACTTTGTCTAGACGTGTTTCTTTCTTAAATGTGTCATAAATTAGCCATTTTTGTAATAGGCCTAACATAAAAAGGGCGATGCTTGGAATCATGTTATTGGCGCGAAGAAAAACATACGTAACTGAAGAGACGAATTAATTAGCATATTCTTATTAATATTAGGATAAAGTTGTAATGCATGACGAAACAAATTATATTTAAAATAATTATTGAAGAAATGTTAAACGTTAGAAAATCGTATTATTAAAAAATAATAATGTAGGCCTATTTCCGTGGATCTGACAGGGTGGGCAAGCTGACACCTAGGCCCACCCGTAAATCCACAGCATTACAAGCAATAAA

Function

NR:

description
putative nuclease HARBI1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000033_01394360_01396488.mRNA True 1992 mRNA 0.40 4 1393134 1396504

Neighbor

gene id symbol gene type direction distance location
CI01000033_01380358_01381124 NA coding downstream 12010 1380054 ~ 1381124 (-)
CI01000033_01362658_01368574 TUBB4A.S, TBB2C, TUBB4B, TUBB4A, TUBB, TUBB4B.L, MGC53997, TUBB2B coding downstream 24560 1361777 ~ 1368574 (-)
CI01000033_01336781_01348511 ASF1BA, AS1LA, AS1LB, ASF1BB, ASF1B.L, ASF1B coding downstream 43729 1336564 ~ 1349405 (-)
CI01000033_01324488_01329483 NA coding downstream 63634 1324248 ~ 1329500 (-)
CI01000033_01312689_01320687 PRKACAA, PRKACA.L, PRKACA, KAPCA coding downstream 72447 1312626 ~ 1320687 (-)
CI01000033_01415209_01416422 NA coding upstream 18634 1415138 ~ 1416422 (-)
CI01000033_01460962_01480142 NA coding upstream 64458 1460962 ~ 1480142 (-)
CI01000033_01534011_01536432 NA coding upstream 136367 1532871 ~ 1536812 (-)
CI01000033_01757249_01761108 NA coding upstream 360089 1756593 ~ 1761108 (-)
CI01000033_01783293_01786740 NA coding upstream 386557 1783061 ~ 1786744 (-)
G168877 NA non-coding downstream 18161 1374744 ~ 1374973 (-)
G168871 NA non-coding downstream 114101 1278624 ~ 1279033 (-)
G168870 NA non-coding downstream 114737 1278040 ~ 1278397 (-)
G168869 NA non-coding downstream 116109 1276467 ~ 1277025 (-)
G168868 NA non-coding downstream 116963 1275886 ~ 1276171 (-)
G168906 NA non-coding upstream 53207 1449711 ~ 1449915 (-)
G168908 NA non-coding upstream 87589 1484093 ~ 1486349 (-)
G168918 NA non-coding upstream 152775 1549279 ~ 1551732 (-)
G168923 NA non-coding upstream 171085 1567589 ~ 1567799 (-)
G168924 NA non-coding upstream 175197 1571701 ~ 1571925 (-)
G168847 NA other downstream 163585 1225588 ~ 1229549 (-)
G168237 NA other downstream 621543 757371 ~ 771591 (-)

Expression


Co-expression Network