AMCG00008820 (copz1,LOC105907582,LOC107664248)


Basic Information

Item Value
gene id AMCG00008820
gene name copz1,LOC105907582,LOC107664248
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12688197 ~ 12693501 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008820
TACTCAGGattgagtttgtgtgtgagtgtgagagtgcgGGGGCATCTGAAGCCTAAATGCTGTATTCTCTTTGCACAGGAACCTTCTCTGTACACGGTGAAGGCGGTTCTCATCCTGGACAACGATGGGGAGAGGCTGTACGCCAAGTATTACGATGACACGTACCCCACGGTGAAGGAGCAGAAGGCCTTTGAGAAGAACATCTTCAACAAGACCCACCGCACTGACAgtGAGATCGCTCTGCTAGAAGGATTGACGGTCGTCTACAAGAGCAACATTGACCTGTACTTCTATGTGATTGGCAGCTCACACGAAAATGAGCTGATGCTCATGTCGGTGCTGAACTGCCTGTTTGACTCGCTCAGTCAGATGCTGAGGGTGATCCTGGAGAGCGATCCCCAGCAGGTGGTGCACCGCGTGGCCCTGAGGggggaTGACGTGCCACTCACAGAGCAGACTGTCACTCAGgtgcTCCAGTCCGCTAAAGAGCAGATCAAGTGGTCTCTGCTGCGATAGGAGAGGAGCTGAAAGCAACGTGAGGGAggagtacaaacacacacacacacactcacacaaatacacacacacacacacacacacacagtgacagacgcacacagacgcTCCCATCTTGTGAATCTCTTTCCACCCGTCCCCGTCCCTCTGTCTCCGTGTCCAGCCCTCACCCCCAGGGCAGTGCTGACACATTCCACTTCCTCCACAGTCAGGCCAAACACCACAATTGTGTTTTTAGTCTCGTACTGTTCTGTAAAGGAATTCATTAGCTCATGGAGTCGGAGAGGGAAGTGGCTTTGGATGCTGTAGCTAGcgtctggggtgggggggggtgcaaGCAGAGATGTGGAGAGGAAAGAGATACGGGTCTCAATCTGACCAACAAAACTCATTGGACTGTAACTGCACTGAACTTGCCTGGTGCCTCCACCAATCAGCATCACCCAGGGACCTCAATGTACGTGACCTGAACCCCGCATTCCTGTTTGTCAAGGGTATGCAACAGTAGGCTGTTTTTATTGCGACTGTATGTGGAATTGAATGAAATGGTGTGAGAGCTGATTGGCCGATGGACGTTCCCTTCATTGTCTTACCTGACAGGCtaccctcccctcccctctcatgaataataattagaCTCGTAATATGGGGAATCTGAGAATGGAAGCTGGTTTCCAATTGGGCTTCCTGCCCCTCTGATGAATATTCACATTCCAGTAGCTGCTCGGTTGGGTTTGGTTGATATTTTCTGTACGTGCCGGTGTAACTGTTGCCACTTGATTTCCCACCGCCCTGCCCGCTCTTAATCACGATCCTTAGGAATCAGTAGCAGACCGACAGCGATGCATCACTGTGTATTGCTTCAGTAGGGTTTTCATCAGATACTGTAGTGACGTACAGAGACAGTGAGCGGTGGAGACGAcactgtgcatttgtttctgtaacaCACAAAGTCCCTGTGCCGGCTCTACATGCATTTATCAGATGGTTAAAAGACCGAAGCCCCCCAGGATGTCTCCTGTTCTCTGGACTGCTGTCTGTAACAGATGACTGCACTGAGTTGCGATGCACTGTACAATCTGTTGTGAAATGTTATCTTTCGTGCAGgttcaaaataaaccaaaataaataaacaaaaaaaatctttaaaatggcCAGTGCTTCTGCTCGCGTTTATTCTTTTAACACAACCGGTGTTTTAGGCTGGTCTTGTTGGCCATGTGCCGGTACTCCAACCCACCGTGCTGCTATGTTGGGTAACTGATCATTATGATTTAGTTATGTAGCAGGTGCTTTATCTCAGGTATTAAGCATTAACCCATGACGCTCTCCACATCCACAACATGTGAAGGGTTGCAGTTAGCTGTTATCTGCTTTTGTACCTATTACCAGCCTGTCTGTTTGGCCCCCCGAACTGCGGGGACTAAAGACCACCTCAACTCCGCAAAGCTTAGGCAATGGCTCCACCTGGTGGTCGAGAGGGGAAAACGCACGTAAAAGATAATTCTGTGTTTAGTTGACAGATGGAGGGGGCTCAGTCACGATTCATCAATCAATGAAATTGATCACTGATAGGTTGTAAACGTTCTGCTGAAGTTAGAACGACTTTACAGGTGCTCATAAGTCTTACTTCAGATACGTATATTTATAAAGAAGATCCCAGAAACGATAGGGGAATTATATTAGAATATTTGCTGAAGTGACTTGTAGAAGACACGCTGTAGATCGTAACAGGTGCAGAATCtaaggggtggggtggggggttcacCCAGCTGTGGATTGCTAAGAACTGGTGATGTACGTACAGCCCCGGAAAAAATTTACAGACCACTGcaattatttcttaaatcagcatctctacatgtatggcagccattccattccattcatagttttatttgaaaattgggagaaatgttttcagtagtttatagaataagacaaaaatgttaattttacccaaacacatacctataaatagtaaaaccagagaaactgat

Function

symbol description
copz1 Acts upstream of or within lens development in camera-type eye. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Orthologous to human COPZ1 (COPI coat complex subunit zeta 1).

NR:

description
PREDICTED: coatomer subunit zeta-1-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030117 membrane coat cellular_component

KEGG:

id description
K20472 COPZ, RET3; coatomer subunit zeta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008820 True 2516 mRNA 0.47 7 12688197 12693501

Neighbor

gene id symbol gene type direction distance location
AMCG00008813 NA coding upstream 25746 12660779 ~ 12662451 (+)
AMCG00008814 hnrnpa1 coding upstream 28465 12654567 ~ 12659732 (+)
AMCG00008819 NA coding upstream 118510 12569028 ~ 12569687 (+)
AMCG00008811 hoxc4 coding upstream 183168 12504256 ~ 12505029 (+)
AMCG00008812 NA coding upstream 218654 12468816 ~ 12469543 (+)
AMCG00008825 NA coding downstream 109768 12803269 ~ 12810428 (+)
AMCG00008824 NA coding downstream 127297 12820798 ~ 12840200 (+)
AMCG00008828 NA coding downstream 197501 12891002 ~ 12895612 (+)
AMCG00008830 pip4k2c,LOC103385206 coding downstream 206394 12899895 ~ 12907881 (+)
AMCG00008829 NA coding downstream 216184 12909685 ~ 12912736 (+)
G51718 NA non-coding upstream 40233 12646523 ~ 12647964 (+)
G51710 NA non-coding upstream 128498 12559471 ~ 12559699 (+)
G51685 NA non-coding upstream 184021 12503916 ~ 12504176 (+)
G51673 NA non-coding upstream 248674 12438851 ~ 12439523 (+)
G51665 NA non-coding upstream 261975 12425933 ~ 12426222 (+)
G51735 NA non-coding downstream 27581 12721082 ~ 12722980 (+)
G51736 NA non-coding downstream 45696 12739197 ~ 12745766 (+)
G51796 NA non-coding downstream 202848 12896349 ~ 12897107 (+)
G51814 LOC106567079 non-coding downstream 234117 12927618 ~ 12927845 (+)
G51828 NA non-coding downstream 285363 12978864 ~ 12980775 (+)
AMCG00008810 NA other upstream 138579 12539598 ~ 12549618 (+)
AMCG00008784 NA other upstream 983784 11694654 ~ 11704413 (+)
G51445 NA other upstream 1222709 11460363 ~ 11465488 (+)
G51297 NA other upstream 1647523 10984890 ~ 11040674 (+)
AMCG00008752 LOC107666323 other upstream 1841761 10828568 ~ 10846436 (+)
G51734 NA other downstream 21993 12715494 ~ 12716786 (+)
G51756 NA other downstream 149214 12842715 ~ 12846233 (+)
G51812 NA other downstream 231737 12925238 ~ 12926794 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other downstream 287303 12980804 ~ 12992725 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other downstream 528819 13222320 ~ 13224946 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_02141590_02142836 COPZ1, COPZ1.L, COPZ1-B coding CI01000001 null 2141560 ~ 2142986 (-)