AMCG00008873


Basic Information

Item Value
gene id AMCG00008873
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13585087 ~ 13608948 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008873
GAAGAATTGCAGATTGTATCCTTGCATTTTGTAACTCGAACTACAGAAAGTTGTTGATCTGCCCAATGTGACACAGAGAGAAGGCGATATATTGTTTCACTCGTTGGCATTGCACACAGACTGCCGCACGGTGCCTTCGGTCTGACTCGGTCGTGGATATCCTGTGAGGGAGGCAGTCGCGCAAATCAATGTCATGCGAGCAGCAGGAAACCAGGATTTCTGGAAGAAGGCGGCATCTCTGCACATTGAAGATTAGGCGAGACCGGAAGGGACGCACAGACCAATAACAGTACTCTGATCGCAAGGCAGTGCTCAGGGTCCATCAGGATGCGTTTCCTGAGGAAGCCCACGATCTTGGTGCTGGTGGTGTCCACACTGCTGGTAGTGGCCATCCTGCGGCCCTGGACGCCCAAGCCTACCTCCGCCGTGGACCTGCGCAACCGAGCCAGCGCCAGTGCCGAAAGACTGCTGGAAGAGCGAGTGCGGCACAGCCCGGGCAAGTACGAGCACATCCCTTACCGGCTGAAGGTCAGCGTGGCTGGgttGCTGGCGAAcaatgggtgtgtgtgtgagggagaggaggggggtgtGAACCTGCCGTTCTCTCAGGTGCTGTTCCCACGAGTGGGGGCCTACTCCCTGGACAGGGCCTTCCAGGCatcagagctggaggagGTGAACCTCACGGCCACGCTTGGGACCTTTGACGTAGCGGCGCAGGTGGAGGGAGTGACGGTCAGAGGTGATGCGGAAATGCACATGTCGTTGTCCACCAGCCTCCTGCCCCAGCTGAACCGGCAGCTGCAGTTCGTGACCTACACCAACACGCTATTCCACCCCAACACAGCTGACACTGTGCAGTTTGAGACTGACGGACACCAGGCTCTGTTCACCATTAAGATCCGCCACGGAGTCACACCCAAACTCTACAACCCTGGCCCCAAGGGAGATTATAACATCAGTGCCCTAGTGACCATAGCAACCAAGACGTTCCTGCGCTATGACAAGCTGCAGGTTTTGATTGACAGCATCCGCAGCTTCTACCCCACTGTCACCATAGTGATTGCAGACGACAGCAAGGAGCCACAGCCCATGAGGGGACCCCACATCGAGCATTACACCATGCCCTTCGGCAAGgGCTGGTTTGCAGGCAGGAATCTGGCCATCTCTCAGGTGACCACCAAGTATGTCCTGTGGGTGGACGATGACTTTATCTTCACTGCCAGCACCAAGCTGGAGAAGCTGGTGGATGTCCTGGAGAAGACCACCCTGGACCTGGAGGGCGACTGTCTGCACATGCGCCGTGGCTACCACCACACCATCGCTGGCTTCCCCCATTGTGTTGTCACCGACGGCGTCATCAACTTCTTTCTGGCCCACACTGAGCGTGTGCAGCAAGTCGGCTTTGACCCCCGGCTGGCCAGGGTGGCACACCTAGGATGTAcaaaaggaactatCCACGCCTCCAAGATCAAGCTGCCCTGGAGCCAATCGGAAGCCGAGAAGACGTATGCCAAGTTCCGCTACCCTGCCAAGTCCTCCGACGCCAGCAACACCAAAAACGGCCTACTGTACTTCAAGAACCGCTTTAAGTGCCTGACGCACAACTGA

Function

GO:

id name namespace
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00725 B4GALNT1, GALGT; (N-Acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008873 True 1611 mRNA 0.57 10 13585087 13608948

Neighbor

gene id symbol gene type direction distance location
AMCG00008874 NA coding downstream 256 13580416 ~ 13584831 (-)
AMCG00008869 NA coding downstream 44801 13537993 ~ 13540286 (-)
AMCG00008866 NA coding downstream 97468 13480978 ~ 13487619 (-)
AMCG00008865 NA coding downstream 111871 13459561 ~ 13473216 (-)
AMCG00008864 acvr1ba,LOC108275853,LOC107716207,LOC107695803,LOC107708859,LOC107563637,LOC107570552 coding downstream 128958 13439922 ~ 13456129 (-)
AMCG00008872 NA coding upstream 29709 13638657 ~ 13643375 (-)
AMCG00008878 NA coding upstream 111762 13720710 ~ 13734038 (-)
AMCG00008879 NA coding upstream 128934 13737882 ~ 13771390 (-)
AMCG00008882 ddx23 coding upstream 222259 13831207 ~ 13839926 (-)
AMCG00008881 LOC103358261,LOC101472065,LOC103037018,LOC100705424,LOC104932892 coding upstream 257706 13866654 ~ 13881491 (-)
G52019 NA non-coding downstream 129235 13373383 ~ 13455852 (-)
G52041 NA non-coding downstream 145461 13438088 ~ 13439626 (-)
G51965 NA non-coding downstream 284804 13299338 ~ 13300283 (-)
G51948 NA non-coding downstream 327468 13253853 ~ 13257619 (-)
G51947 NA non-coding downstream 369092 13214272 ~ 13215995 (-)
G52131 NA non-coding upstream 162612 13771560 ~ 13776929 (-)
G52157 NA non-coding upstream 214165 13823113 ~ 13830315 (-)
G52214 NA non-coding upstream 396779 14005727 ~ 14006439 (-)
G52233 LOC101154678 non-coding upstream 518291 14127239 ~ 14127501 (-)
G52296 NA non-coding upstream 663026 14271974 ~ 14275087 (-)
AMCG00008860 NA other downstream 259860 13316867 ~ 13325227 (-)
G51974 rps26 other downstream 275662 13307422 ~ 13309425 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other downstream 323265 13257698 ~ 13261822 (-)
AMCG00008844 NA other downstream 400731 13135732 ~ 13184356 (-)
AMCG00008845 NA other downstream 487153 13090537 ~ 13097934 (-)
G52099 NA other upstream 76387 13685335 ~ 13686737 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other upstream 329503 13938451 ~ 13983893 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other upstream 1084882 14693830 ~ 14715322 (-)
AMCG00008923 NA other upstream 1231759 14840707 ~ 14865988 (-)
AMCG00008934 NA other upstream 1423399 15032347 ~ 15057206 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_02110958_02136112 NA coding CI01000034 null 2110946 ~ 2136112 (-)