AMCG00009040


Basic Information

Item Value
gene id AMCG00009040
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 21294324 ~ 21295469 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009040
ATGAGCTCAATACTTCATTCACGTTACAGTGCAACACAAATAACCAAACATGTTGCCAGTAGCATAATAGCATCATCGAGTAAGTTAGCCATCCTAATTGACGAGGCCTCTTCTTTAAGTCACAAAGCTGTCATGACAGTTTCAGTTAAAGCATCAGTTCAAGAAGAAGAAAGCCCTGAATTCATATTCCTTGAGCTTGTTGAACTGGAAAATCAGAGAGCAGATGGCAAAGTAGAGGGTTTACTCACTTTTTTAACTAATGCTGGCTTTACAGAAGAATGGCTTCTTGAAAACTGGGTAACATTTGTCACTGATGGTGCCAGCATCATTCCTGAATTTCTTTGTGACCTTGGGCTCATGTATGACACACTCCATGAACTAAGTGATCTGTCACAGGAGCTTCAGGCTCGTTCTATAACTCTCCTCAGAGCAGAGCATCTGCTGAAATGCACAATCAGAgtgatacattcatttaaagagAGTCCAGGTCAGAAATATGATGAGGCTTTAGAAGCAAAAGAGACCttgcaaagaaatacaaagcTCAAGTCTATCAATCCAGGGCAGTTCTTACAAATCCTTGTGAACAATCTTGAGCAATGCTTGTCTTTCGAAGATGAGACCATCAAGGACCTCAGCATCCTTGCTCAAAGTAAATGGCCATCAAACCCCAGCATCCGCCATGGTGAAGAACAAGTTAAGCGACTGTGCAAGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009040 True 717 mRNA 0.42 3 21294324 21295469

Neighbor

gene id symbol gene type direction distance location
AMCG00009036 NA coding downstream 551992 20741493 ~ 20742332 (-)
AMCG00009037 NA coding downstream 552838 20741291 ~ 20741486 (-)
AMCG00009031 NA coding downstream 1143832 20148097 ~ 20150492 (-)
AMCG00009030 NA coding downstream 1184124 20108946 ~ 20110200 (-)
AMCG00009028 dcun1d1,LOC107656862,LOC107722250,LOC107568628 coding downstream 1284079 19971515 ~ 20010245 (-)
AMCG00009039 NA coding upstream 74 21295543 ~ 21436422 (-)
AMCG00009041 tbl1xr1,LOC103376174,LOC106584305 coding upstream 574143 21869612 ~ 22033107 (-)
AMCG00009044 LOC107578566 coding upstream 1179885 22475354 ~ 22486801 (-)
AMCG00009047 NA coding upstream 1215723 22511192 ~ 22529264 (-)
AMCG00009046 xrn1,LOC107563287,LOC107710613 coding upstream 1245278 22540747 ~ 22556988 (-)
G53918 NA non-coding downstream 423 21292475 ~ 21293901 (-)
G53916 NA non-coding downstream 18983 21274730 ~ 21275341 (-)
G53899 NA non-coding downstream 230973 21063073 ~ 21063351 (-)
G53849 LOC100846954 non-coding downstream 708121 20585988 ~ 20586203 (-)
G53790 NA non-coding downstream 1194309 20099747 ~ 20100015 (-)
G53953 NA non-coding upstream 476177 21771646 ~ 21771991 (-)
G53955 NA non-coding upstream 512815 21808284 ~ 21808611 (-)
G53999 NA non-coding upstream 851839 22147308 ~ 22147564 (-)
G54008 NA non-coding upstream 1008139 22303608 ~ 22303893 (-)
G54078 NA non-coding upstream 1333862 22629331 ~ 22630508 (-)
G53809 NA other downstream 1022510 20179799 ~ 20271814 (-)
AMCG00009027 NA other downstream 1232145 20061524 ~ 20062179 (-)
AMCG00009029 NA other downstream 1324048 19961027 ~ 19970276 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other downstream 3425628 17868386 ~ 17868696 (-)
AMCG00009001 NA other downstream 3547281 17724719 ~ 17747043 (-)
G54003 LOC107575789 other upstream 887619 22183088 ~ 22183565 (-)
AMCG00009060 hltf other upstream 2529760 23825229 ~ 23863035 (-)
G54544 NA other upstream 3857797 25153266 ~ 25156338 (-)
AMCG00009100 NA other upstream 3878208 25173677 ~ 25176378 (-)
AMCG00009106 NA other upstream 4165137 25460606 ~ 25462690 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G140413 NA non-coding NC_053125.1 CM020922.1 1461638 ~ 1462865 (-)