AMCG00009001


Basic Information

Item Value
gene id AMCG00009001
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17724719 ~ 17747043 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009001
CCTAAGAAGGGCAAGAAGGCAACAGCCTCTGCTGAGAAGAAAGAGGAAGCAGCCCCTCCACCAGAAGAGAAGAAACAGGAAGCAGCCCcagcagagaCTCCTGCTGACCAGGGAAAAACCGAGCTGACTGGTCTGTTTGTGGAGAAGCCTCAGACCGCCACTGCCACCACAGGTAAGGACATTGTGTTCGTGGCGAAGGTGGACTCCTCCAAGCTGATGAGAAAGCCAGTGATGAAGTGGCTGAAGGGCAAtggggaTGCAGGGGAAGATGCAGGTGATCTAGACTTCAGTGCTTTACTCAAGAAAAGGGAGGTGAAGAAGCAGGAGGAGCCGGTGGAGGAGACGGATGTGTGGGAGATCCTGAAGAATGCCAAACCCAGTGAGTTCGAGAAGATCGCCTTCCAGTACGGCATCACCGACCTGCGCGGCATGCTGAAGCGgctgaagaagatgaagaaggtGGAGCCCAAGAAGTGTGATGGGTCGGACAACTCCACAGTCAGCTTGATCCTGTTGCCCTTGTCCACTGAGTATGCACTGTCCAGCTTCTTCAGGAAGGCTGAGAGGGCCATGTTCAAGTGTGAGGTGTCTGATGACAAGGTCACTGGCAAGTGGTACAAAGATGGAGTGGAGGTGTTGCCTAGCAAACGCATCAAGATGAGCCACATCGGCAGaaTTCACAAGCTCACAATTGATGATGTTGTCCCTGAGGATGCTGGGGACTACACTTTCATCCCTGATGGAtatgccctctctctctctgccaagCTCAACTTCCtggAGATCAAGATTGACTATGTGCCACGACAAGatcCTCCCAAGATTCACCTGGACACCACTGGTAACATTGTATCTCAGAACACCATCATCGTCGTGATCGCCGAGGTGGAAGGCAGGGTGCGGGTTGAGAGCCGGAAGGACCTCAGCTGCTTTGTGATAGAGGGGGCAGAGCGGGAAGACGAGGGGAAGTACACCATCACTGTGACCAACCCTGCCGGTGAGGACAAGGCTGTGCTCTTCATCAAGATCGTGGacgtTCCTGACCCCCCTGAGGCAGTAAAGTGCATTGCAGTGGGGGAGGACTGCGCCACTATCGTGTGGGAGCCCCCGAAATATGACGGGGGACAGCCTGTGAAAGGCTACCTgatggaaagaaagaagaaaggcaGCTCGCGGTGGACAAAGCTGAACTTTGACATTTTTGAGGGGCAGACCTATGAGGCCAAGAGGATGATCGAGGGTGTGCTGTACGAGATGAGGGTGTTCGCGGTCAATGGCATCGGGGTTGGCCAACCAAGTGCAAACTCAAAGCCATTCATGCCCATCGCCCCCACCAGCGAGCCCACTCACCTGACTGTGGAGGATGTGACTGACACCACCACTACGCTGAAGTGGCGCCCGCCCGATCGACTTGGGGCAGGGGGCATCGACGGATATGCCATTGAGTACTGCAAGGAGGGAGacACCAAGTGGGTGTTGGCCAATCAGGAGCTGGTCGATAGGAACAGCTATATGGTGAAGGGTCTGCCCACTGGGGAGAAGATTGACTTCCGGGTCGTGTGCGTCAACATGGCCGGTCGCTCGCTACCAGCCAAGCTGAGCCAGCCTGTCACCATCCGCGAGATTGTCCagtATCCTAAGATCCGTCTGCCTCGACAGCTGAGGACAAAATACATCAAGAAAgggaaGCCCCGCCCCATCGTCACCTGGCTGAAGGACGGGCAGCCACTGGACCCCAAGAAGGAGTGGTTCACAGTGTACGAGCACAACCGCCGCACTAATTGCACAGTGTCTGATCTCATCATGGGCAATGAGTACTACTTCCGGCCCAAGATCATCTGGATGAAGAATAAGATGCAGATTGGCGAGGACCCCAAGTTCCGCATGCAGAACAACCAGGGCGTGTTGACCCTGAACATTCGCAAGCCCAGCCCTTATGATGGGGGCAGCTACAGCTGCATGGCTGTCAACTCACTGGGGGAGGCTGTGGTGGAGTGCAAGCTGGAGGTCAGAGTTCAACCTACTGAGAAGCTGTAA
>TU66702
TCTAGAGTCTCAAGTGAAACTCttccccacctccctctctcttggggaggggggggggttgtctTAGGTGCCAAGAGGCTGACATacgagggagtgagagagagagagcgagagagaataAACGAGAGTGTTCTTATTTCGTGCAAACAGTCTCGCAGACACAAGGACAGAGGGagagcgacagagagagagacagacacagacagacggacagacatgCCTGAGGCCAAGAAAGCAGTGCCTAAGAAGGGCAAGAAGGCAACAGCCTCTGCTGAGAAGAAAGAGGAAGCAGCCCCTCCACCAGAAGAGAAGAAACAGGAAGCAGCCCcagcagagcaTGATGCTGAATTGCCTGAAGATGagaCTCCTGCTGACCAGGGAAAAACCGAGCTGACTGGTCTGTTTGTGGAGAAGCCTCAGACCGCCACTGCCACCACAGGTAAGGACATTGTGTTCGTGGCGAAGGTGGACTCCTCCAAGCTGATGAGAAAGCCAGTGATGAAGTGGCTGAAGGGCAAGTGGCTGGACCTGGGCAGCAAGGCTGGCAAACACCTACAATTCAAAGAGACCTATGACAGAGAGAGCAAGaTCTACACCTATGAGATGAAGATTGTGAAGGTGATTGATGGTGATGCGGGCGGGTACAGGTGTGAGGTGTCCTCCAAGGACAAGTTTGACAGCTGCAGCTTCGACCTCACAGTGGAGGTTCCACAGGAAGAGAAGTCTGCAAACATTCTGGAGGCATTTAAGAGATCtggggaTGCAGGGGAAGATGCAGGTGATCTAGACTTCAGTGCTTTACTCAAGAAAAGGGAGGTGAAGAAGCAGGAGGAGCCGGTGGAGGAGACGGATGTGTGGGAGATCCTGAAGAATGCCAAACCCAGTGAGTTCGAGAAGATCGCCTTCCAGTACGGCATCACCGACCTGCGCGGCATGCTGAAGCGgctgaagaagatgaagaaggtGGAGCCCAAGAAGTGTGATGGT

Function

GO:

id name namespace
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG:

id description
ko04020 Calcium signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009001 True 2037 mRNA 0.55 22 17724719 17741782
TU66702 False 987 TUCP 0.53 11 17736589 17747043

Neighbor

gene id symbol gene type direction distance location
AMCG00008999 NA coding downstream 59983 17655595 ~ 17664736 (-)
AMCG00009000 NA coding downstream 97936 17615728 ~ 17626783 (-)
AMCG00008998 scaf1,phrf1,LOC107580000 coding downstream 113361 17601832 ~ 17611358 (-)
AMCG00008994 NA coding downstream 504278 17205090 ~ 17220441 (-)
AMCG00008992 NA coding downstream 735293 16970232 ~ 16989426 (-)
AMCG00009015 NA coding upstream 403820 18150863 ~ 18151365 (-)
AMCG00009012 NA coding upstream 428852 18175895 ~ 18208537 (-)
AMCG00009013 NA coding upstream 476804 18223847 ~ 18253002 (-)
AMCG00009011 LOC105011705,LOC106613920 coding upstream 525575 18272618 ~ 18288172 (-)
AMCG00009018 eif4a2,LOC107103884,LOC107593804 coding upstream 630391 18377434 ~ 18382391 (-)
G53286 NA non-coding downstream 69511 17654125 ~ 17655208 (-)
G53188 NA non-coding downstream 380937 17343442 ~ 17343782 (-)
G53156 NA non-coding downstream 615008 17109061 ~ 17109711 (-)
G53147 NA non-coding downstream 642654 17081678 ~ 17082065 (-)
G53142 NA non-coding downstream 663168 17060808 ~ 17061551 (-)
G53411 NA non-coding upstream 337204 18084247 ~ 18084482 (-)
G53425 NA non-coding upstream 355679 18102722 ~ 18113638 (-)
G53428 NA non-coding upstream 384437 18131480 ~ 18131785 (-)
G53478 NA non-coding upstream 560394 18307437 ~ 18307999 (-)
G53543 NA non-coding upstream 854670 18601713 ~ 18601951 (-)
AMCG00008989 prr12b,prr12,LOC107708947,LOC104948901,LOC108441158,LOC108273897,LOC107729421,LOC107658420 other downstream 811420 16823795 ~ 16913299 (-)
G53017 NA other downstream 1110258 16613224 ~ 16614461 (-)
G52951 NA other downstream 1319593 16404710 ~ 16405126 (-)
AMCG00008971 NA other downstream 1650784 16063554 ~ 16073935 (-)
G52834 NA other downstream 1761102 15957667 ~ 15963617 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other upstream 121343 17868386 ~ 17868696 (-)
AMCG00009029 NA other upstream 2213984 19961027 ~ 19970276 (-)
AMCG00009027 NA other upstream 2314481 20061524 ~ 20062179 (-)
G53809 NA other upstream 2432756 20179799 ~ 20271814 (-)
G54003 LOC107575789 other upstream 4436045 22183088 ~ 22183565 (-)

Expression


Co-expression Network