G53411


Basic Information

Item Value
gene id G53411
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18084247 ~ 18084482 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66819
CACAAGTTGACCTTGCTTCATTTTGGTTACTGGCTGCAAGTGAATATCCCTCTCTGTCAAAGCGGGCAATCAAATTTCTATTGCCTTTCACCACTACATACTTATGTGAGTCAGGGTTCTCCACTGTGACTatcacaaaatcaaaagcaaggAGCAAACTGAAAGCTACTTTGGATGCTACTCTCCGTTTCAGTCTCTCACCCATTTCACCAAGACTTGATCTTATTATCTCCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66819 True 236 lncRNA 0.42 1 18084247 18084482

Neighbor

gene id symbol gene type direction distance location
AMCG00008999 NA coding downstream 419511 17655595 ~ 17664736 (-)
AMCG00009000 NA coding downstream 457464 17615728 ~ 17626783 (-)
AMCG00008998 scaf1,phrf1,LOC107580000 coding downstream 472889 17601832 ~ 17611358 (-)
AMCG00008994 NA coding downstream 863806 17205090 ~ 17220441 (-)
AMCG00008992 NA coding downstream 1094821 16970232 ~ 16989426 (-)
AMCG00009015 NA coding upstream 66381 18150863 ~ 18151365 (-)
AMCG00009012 NA coding upstream 91413 18175895 ~ 18208537 (-)
AMCG00009013 NA coding upstream 139365 18223847 ~ 18253002 (-)
AMCG00009011 LOC105011705,LOC106613920 coding upstream 188136 18272618 ~ 18288172 (-)
AMCG00009018 eif4a2,LOC107103884,LOC107593804 coding upstream 292952 18377434 ~ 18382391 (-)
G53286 NA non-coding downstream 429039 17654125 ~ 17655208 (-)
G53188 NA non-coding downstream 740465 17343442 ~ 17343782 (-)
G53156 NA non-coding downstream 974536 17109061 ~ 17109711 (-)
G53147 NA non-coding downstream 1002182 17081678 ~ 17082065 (-)
G53142 NA non-coding downstream 1022696 17060808 ~ 17061551 (-)
G53425 NA non-coding upstream 18240 18102722 ~ 18113638 (-)
G53428 NA non-coding upstream 46998 18131480 ~ 18131785 (-)
G53478 NA non-coding upstream 222955 18307437 ~ 18307999 (-)
G53543 NA non-coding upstream 517231 18601713 ~ 18601951 (-)
G53556 NA non-coding upstream 574869 18659351 ~ 18659633 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other downstream 215551 17868386 ~ 17868696 (-)
AMCG00009001 NA other downstream 337204 17724719 ~ 17747043 (-)
AMCG00008989 prr12b,prr12,LOC107708947,LOC104948901,LOC108441158,LOC108273897,LOC107729421,LOC107658420 other downstream 1170948 16823795 ~ 16913299 (-)
G53017 NA other downstream 1469786 16613224 ~ 16614461 (-)
G52951 NA other downstream 1679121 16404710 ~ 16405126 (-)
AMCG00009029 NA other upstream 1876545 19961027 ~ 19970276 (-)
AMCG00009027 NA other upstream 1977042 20061524 ~ 20062179 (-)
G53809 NA other upstream 2095317 20179799 ~ 20271814 (-)
G54003 LOC107575789 other upstream 4098606 22183088 ~ 22183565 (-)
AMCG00009060 hltf other upstream 5740747 23825229 ~ 23863035 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_00140414_00141739 NA coding CI01000006 null 140023 ~ 142211 (+)