G53142


Basic Information

Item Value
gene id G53142
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17060808 ~ 17061551 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66513
ATGCTGTCCGTATTGTGCATGGAGCTGTGCAAGGATTGCtaaatgaaatatcacacaatgtggGTCCTAATGATTTTGTACAGCTTAGACTGAGCTCGGGGTCATTAAATAATCCTTTCTATTCGAGGAGGCGAAATTTGGGGGAGCTGGATTCTGCAGATTTCTTAGAGAGTATAGCTAATTTACTACAAAGTCACACCGAAATTCTAACAGATGGGAGTTTGCGAATAACGGTCACCGTGATTAGAAATATgcaaggtggtggtggtgcgcGGAGGCGcttaaaaggtattttatttagtaaaataatagacaaaaaaGGGCTTGTctcattgatttcaaaaaccaaggtaacaatttatgttttgctgCCAGTGTGTACCGCCTGTGGAAGGGTAAAGAATACACAGATTCCGAAATCTTAGATGGTGCCAAACGAATGCATAGTCAGCTAGGgttttcaattcagaaaaaaaaagtttttcagaTATTCAGGCATTTGAAAGACTATTGGGGGTCATTATCAAAGTATTGTACCATGAAAACGGATGGGAATATTTTACTATGGGGCCTACACCTATACATTCTAAAGTCCTGTTTGTGTTACTTCACGAGCAGCATTACTATGGGATTTTAAACATCAGAACATTTATAGGTGCTAGCTATTTCTGTGATTATTGCCATGCGGTATATGGGCATAAAAATAGACACAGCTGCCGGAGCCGGTGCAGAGCGTGTTTAGAC

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66513 True 744 lncRNA 0.40 1 17060808 17061551

Neighbor

gene id symbol gene type direction distance location
AMCG00008992 NA coding downstream 71382 16970232 ~ 16989426 (-)
AMCG00008987 NA coding downstream 276786 16782779 ~ 16784022 (-)
AMCG00008980 NA coding downstream 541242 16478788 ~ 16519566 (-)
AMCG00008975 NA coding downstream 722100 16336415 ~ 16338708 (-)
AMCG00008976 LOC107551165 coding downstream 738177 16319368 ~ 16322631 (-)
AMCG00008994 NA coding upstream 143539 17205090 ~ 17220441 (-)
AMCG00008998 scaf1,phrf1,LOC107580000 coding upstream 540281 17601832 ~ 17611358 (-)
AMCG00009000 NA coding upstream 554177 17615728 ~ 17626783 (-)
AMCG00008999 NA coding upstream 594044 17655595 ~ 17664736 (-)
AMCG00009015 NA coding upstream 1089312 18150863 ~ 18151365 (-)
G53134 NA non-coding downstream 20128 17040107 ~ 17040680 (-)
G53127 NA non-coding downstream 58590 17002010 ~ 17002218 (-)
G53102 NA non-coding downstream 223245 16833331 ~ 16837563 (-)
G53096 NA non-coding downstream 310191 16747851 ~ 16750617 (-)
G53042 NA non-coding downstream 331616 16673709 ~ 16729192 (-)
G53147 NA non-coding upstream 20127 17081678 ~ 17082065 (-)
G53156 NA non-coding upstream 47510 17109061 ~ 17109711 (-)
G53188 NA non-coding upstream 281891 17343442 ~ 17343782 (-)
G53286 NA non-coding upstream 592574 17654125 ~ 17655208 (-)
G53411 NA non-coding upstream 1022696 18084247 ~ 18084482 (-)
AMCG00008989 prr12b,prr12,LOC107708947,LOC104948901,LOC108441158,LOC108273897,LOC107729421,LOC107658420 other downstream 147509 16823795 ~ 16913299 (-)
G53017 NA other downstream 446347 16613224 ~ 16614461 (-)
G52951 NA other downstream 655682 16404710 ~ 16405126 (-)
AMCG00008971 NA other downstream 986873 16063554 ~ 16073935 (-)
G52834 NA other downstream 1097191 15957667 ~ 15963617 (-)
AMCG00009001 NA other upstream 663168 17724719 ~ 17747043 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other upstream 806835 17868386 ~ 17868696 (-)
AMCG00009029 NA other upstream 2899476 19961027 ~ 19970276 (-)
AMCG00009027 NA other upstream 2999973 20061524 ~ 20062179 (-)
G53809 NA other upstream 3118248 20179799 ~ 20271814 (-)

Expression


Co-expression Network