AMCG00008987


Basic Information

Item Value
gene id AMCG00008987
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16782779 ~ 16784022 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008987
ATGGATCCATCAGTCCTGCCACTGGTGACCCTGCCTGGGTCCGACTCTCTGCTGGACCGCACACAGGCCAAACTGACCCACAGGCTGCTGAAAAAGCTGGGGGCAGGGCTGGAGGTGCGAGTCAAAGGTCAGGGTGTGTGGGCAACCAGACGGGGGGACACCTGGGCCTACTGGAGCCTCAGCCAGCATGACCGGAGTTGTCGGCCCAGGGAGGTGCCCAAGGAGGGGCAGAAGGTCTACAGCATGGGGGAGTTCACTAAGGGGATGATCGACTTCATGGAGAAAGAAACCGGCTCTCCAGCCACCTCCCTCTGGTTCTGCCTGGGTGAGAAGTGGCCCGACCCAGAGAACAGACCCTgggagaaaaaactaattatgGTGGAgGTAACTCTGACCTCTCTGGAGATCCTGCATCAGCTGgctgtccagcagggggcatcaTCGCTGCACAGTGAGGAGGTGGAGCTGCAGGTGTCTGATAATCCCAGCCTGCTAAACTACCTCCTTCAATCTCTGGACAGTATGGATACCAGCTAGAGGGagggttgggggtggggtgagAGGATGATTGGGGAGAAAGAAGCAGAGCAGAGAATCAAGGAGagggcaaagagagagagagagagagag

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008987 True 630 mRNA 0.58 3 16782779 16784022

Neighbor

gene id symbol gene type direction distance location
AMCG00008980 NA coding downstream 263213 16478788 ~ 16519566 (-)
AMCG00008975 NA coding downstream 444071 16336415 ~ 16338708 (-)
AMCG00008976 LOC107551165 coding downstream 460148 16319368 ~ 16322631 (-)
AMCG00008977 LOC106517428,LOC102198306 coding downstream 484523 16293316 ~ 16298256 (-)
AMCG00008974 LOC107730758,LOC105891716 coding downstream 493407 16273804 ~ 16289372 (-)
AMCG00008992 NA coding upstream 186210 16970232 ~ 16989426 (-)
AMCG00008994 NA coding upstream 421068 17205090 ~ 17220441 (-)
AMCG00008998 scaf1,phrf1,LOC107580000 coding upstream 817810 17601832 ~ 17611358 (-)
AMCG00009000 NA coding upstream 831706 17615728 ~ 17626783 (-)
AMCG00008999 NA coding upstream 871573 17655595 ~ 17664736 (-)
G53096 NA non-coding downstream 32162 16747851 ~ 16750617 (-)
G53042 NA non-coding downstream 53587 16673709 ~ 16729192 (-)
G52999 NA non-coding downstream 241224 16541268 ~ 16541555 (-)
G52944 NA non-coding downstream 419900 16362622 ~ 16362879 (-)
G52938 NA non-coding downstream 430479 16352012 ~ 16352300 (-)
G53102 NA non-coding upstream 49309 16833331 ~ 16837563 (-)
G53127 NA non-coding upstream 217988 17002010 ~ 17002218 (-)
G53134 NA non-coding upstream 256085 17040107 ~ 17040680 (-)
G53142 NA non-coding upstream 276786 17060808 ~ 17061551 (-)
G53147 NA non-coding upstream 297656 17081678 ~ 17082065 (-)
G53017 NA other downstream 168318 16613224 ~ 16614461 (-)
G52951 NA other downstream 377653 16404710 ~ 16405126 (-)
AMCG00008971 NA other downstream 708844 16063554 ~ 16073935 (-)
G52834 NA other downstream 819162 15957667 ~ 15963617 (-)
AMCG00008964 snrnp70,LOC107693498,LOC107729450,LOC106600692,LOC106583923 other downstream 930969 15834040 ~ 15851810 (-)
AMCG00008989 prr12b,prr12,LOC107708947,LOC104948901,LOC108441158,LOC108273897,LOC107729421,LOC107658420 other upstream 39773 16823795 ~ 16913299 (-)
AMCG00009001 NA other upstream 940697 17724719 ~ 17747043 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other upstream 1084364 17868386 ~ 17868696 (-)
AMCG00009029 NA other upstream 3177005 19961027 ~ 19970276 (-)
AMCG00009027 NA other upstream 3277502 20061524 ~ 20062179 (-)

Expression


Co-expression Network