AMCG00008971


Basic Information

Item Value
gene id AMCG00008971
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16063554 ~ 16073935 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008971
ATGCACTGGGTGCCTCTGGTTGCCATGGTGATCGCCTcggccctccccctccctcagaACCACTCCCCCAAGGCTGTTGCTGCAAAGACGGGACCCCAGGAGCCCGGAAGCAGTTTCCCTAACAGCAGCCACACTTCCTTCAGCAGCAGTACTGCCCCTACATTGACCAGTCGGACTACTCACAGGGATCAGGTGACTGATGGAATGAATGCTCCAATTGGTGATTTGAGCAGGACATCTGACCGAGGTGAGGACCTCAAATCCAAGCACAGCACGGCTCAGATTGCTGCCCAGGGGAACTACACTTCCCAGAGTCCCCTGAAGTGGGAGGAGTACACATCTGAACAGAACCGTACTGCACTCAACTTCAAACCCAATGGCACCTTAGTGGACTACAACTCCCAGGCACTTCCTGTTCAGGGAGAAATTAACTCCCAGGGGAACAGGACTGCAGAGGATTATAGAAATGATGAAATTACTGCTCAGAAGGACTACAACTCCAAGAGCAATAGagttgatgacatcactgctACACAGGACTACAGCTACCAGACGAACCAGCAGCAAAAGAAAATGGAGAATGAGAGGGAGTGGGccagtgagagtgagagagaggagaaagggagggaaGGGCAAGTAGGGGAGGAGGTGCTGGGTGGGGCAGAGCTCCTTTTTCTGGACACTCACCCACGAGTCCtgttctccccctccccctccccccccgaCGGCCcccccctcctgctcctgctggaGGCAGGGATACTGAcggagggggaggagggagaggtggaggaggagggagacagagacgTGCTTGCACAGGGAGAGGCAGACACACCCCTACatgctctctcctcctcctctccacttcctccccctcccccgctTCCCCGCTCCCGCCGCTCCCTGCGGCACCGGGTAGAGCGTTCCGTATGTGAGTCAGTCAGCGAGTGGGTGACAGACAAGCGAACAGCAGTGGACATCCATGGCAAGACAGTGACTATCCTGCCTGAGATCCAGACCCAGACTGGACCACTGAAGCAGTACTTCTATGAGACCCGCTGCCGCAAGCCGGAGAGGGGGATGGGTGGGTCAGCGGGGCCTGGGGGGGTGTCCGGGGGGGTCTGCCTGGGCGTGGACAGGAGGCAGTGGGTGTCTGAGTGCAAGGTCAAACAGTCGTTTGTGCGAGCGCTGACTGCCGACGCGAACAAGCGTGTGGGCTGGCGCTGGATCCGCATTGACtcatcctgtgtgtgtgtgctactgGCCACGGTCAGTAGAAactag
>TU66179
agagagcgcgCAACGCTCACACACAGGCACgcacagacagaaaacaaagtcACCGTGACTTTAAACGGCACGTCAGAAACGAGAGACAGAACGGGAGGGAGGGGAGTCTAATGAAAATAACTCGTTTAATCTACTTCATTCATGAATAACTGGTTTTAAAGAGATGTTTTGCGCCGTCGACTGCGCTatttccccctttctctccctgcTTCTGTCCGTCTCTGTGTCGGTTTAAttggtctgagagagagagagagagagagagagagagagagaatatatagTCGTTTTGCGTCCCGTTCCCCTTAACGAGAAAATGCGATTCGTgctattttagtttagttttttttttatcttattttactcGTCCGTTTTCAAAAACATTCGctcagttttttctttcattcgtCTTTTTTCCTCTCACCCTCCGCGACTTTGTTTCAGGAATCGGAAAACACGACAGGAGAGGGAAAGGACTCTCTCTGGAATTCGACTGTTTACTTTCAAGACAAGCAAGCGAGAGAACGGACTAAccgagggagggagagcgaaagagagagaataatcATAACATTGCCGAACTATAAGattaacaacattaaatattaagaatattattaattacatttcaacaaCTTTATTTCACTTACAAATAAGAACACTATTCATTTACTGATCCCTgtcctccctctgtctgtgcaGTCGATAGTGTCAGTTCAGGTGTCTCTATATCTGAACCAATGTGCTTTTCAACAGAACTCCGCGACGTCCGAGTTCCGCCGAAACGTTGATATCTTCAGGAGTAATGCACTGGGTGCCTCTGGTTGCCATGGTGATCGCCTcggccctccccctccctcagaACCACTCCCCCAAGGCTGTTGCTGCAAAGACGGGACCCCAGGAGCCCGGAAGCAGTTTCCCTAACAGCAGCCACACTTCCTTCAGCAGCAGTACTGCCCCTACATTGACCAGTCGGACTACTCACAGGGATCAGGTGACTGATGGAATGAATGCTCCAATTGGTGATTTGAGCAGGACATCTGACCGAGGTGAGGACCTCAAATCCAAGCACAGCACGGCTCAGATTGCTGCCCAGGGGAACTACACTTCCCAGAGTCCCCTGAAGTGGGAGGAGTACACATCTGAACAGAACCGTACTGCACTCAACTTCAAACCCAATGGCACCTTAGTGGACTACAACTCCCAGGCACTTCCTGTTCAGGGAGAAATTAACTCCCAGGGGAACAGGACTGCAGAGGATTATAGAAATGATGAAATTACTGCTCAGAAGGACTACAACTCCAAGAGCAATAGagttgatgacatcactgctACACAGGACTACAGCTACCAGACGAACCAGCAGCAAAAGAAAATGGAGAATGAGAGGGAGTGGGccagtgagagtgagagagagg

Function

GO:

id name namespace
GO:0005657 replication fork cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008971 False 1287 mRNA 0.58 1 16063554 16064840
TU66179 True 1421 TUCP 0.47 2 16064225 16073935

Neighbor

gene id symbol gene type direction distance location
AMCG00008968 NA coding downstream 165388 15895688 ~ 15898166 (-)
AMCG00008961 NA coding downstream 206355 15853214 ~ 15857199 (-)
AMCG00008962 NA coding downstream 232925 15827700 ~ 15830629 (-)
AMCG00008963 slc1a9,LOC107578863,LOC108434930,LOC107551162,LOC105012932,LOC107680867 coding downstream 262181 15788545 ~ 15801373 (-)
AMCG00008959 NA coding downstream 378504 15667816 ~ 15685050 (-)
AMCG00008973 NA coding upstream 142603 16216538 ~ 16233132 (-)
AMCG00008974 LOC107730758,LOC105891716 coding upstream 199869 16273804 ~ 16289372 (-)
AMCG00008977 LOC106517428,LOC102198306 coding upstream 219381 16293316 ~ 16298256 (-)
AMCG00008976 LOC107551165 coding upstream 245433 16319368 ~ 16322631 (-)
AMCG00008975 NA coding upstream 262480 16336415 ~ 16338708 (-)
G52831 NA non-coding downstream 113223 15944798 ~ 15950331 (-)
G52814 NA non-coding downstream 123252 15940096 ~ 15940302 (-)
G52812 NA non-coding downstream 132420 15930575 ~ 15931134 (-)
G52809 NA non-coding downstream 153403 15908664 ~ 15910151 (-)
G52808 NA non-coding downstream 155147 15905873 ~ 15908407 (-)
G52866 NA non-coding upstream 51028 16124963 ~ 16126267 (-)
G52873 NA non-coding upstream 55346 16129281 ~ 16130351 (-)
G52915 NA non-coding upstream 134930 16208865 ~ 16215015 (-)
G52918 NA non-coding upstream 164823 16238758 ~ 16254139 (-)
G52929 NA non-coding upstream 237457 16311392 ~ 16313985 (-)
G52834 NA other downstream 99937 15957667 ~ 15963617 (-)
AMCG00008964 snrnp70,LOC107693498,LOC107729450,LOC106600692,LOC106583923 other downstream 211744 15834040 ~ 15851810 (-)
G52782 NA other downstream 225753 15836989 ~ 15837801 (-)
AMCG00008957 NA other downstream 424424 15603825 ~ 15639130 (-)
AMCG00008951 ap2a2,LOC106587467,LOC106562310 other downstream 558037 15469674 ~ 15505517 (-)
G52951 NA other upstream 330775 16404710 ~ 16405126 (-)
G53017 NA other upstream 539289 16613224 ~ 16614461 (-)
AMCG00008989 prr12b,prr12,LOC107708947,LOC104948901,LOC108441158,LOC108273897,LOC107729421,LOC107658420 other upstream 749860 16823795 ~ 16913299 (-)
AMCG00009001 NA other upstream 1650784 17724719 ~ 17747043 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other upstream 1794451 17868386 ~ 17868696 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026427 NA non-coding NC_007114.7 CM002887.2 30036697 ~ 30039149 (-)
grasscarp (Ctenopharyngodon idella) CI01000069_02311794_02313206 NA coding CI01000069 null 2311794 ~ 2315010 (+)